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Gene: Clec5a (C-type lectin domain containing 5A) Rattus norvegicus
Symbol: Clec5a
Name: C-type lectin domain containing 5A
CRRD ID: 1584755
Description: Predicted to have virus receptor activity. Predicted to be involved in several processes, including negative regulation of myeloid cell apoptotic process; osteoblast development; and positive regulation of cytokine secretion. Predicted to localize to cell surface; cytosol; and plasma membrane. Orthologous to human CLEC5A (C-type lectin domain containing 5A); INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; tetrachloromethane.
Type: protein-coding
Also known as: C-type lectin domain family 5 member A; C-type lectin domain family 5, member A; LOC679787; similar to C-type lectin domain family 5, member a isoform 2
Homo sapiens (human) : CLEC5A (C-type lectin domain containing 5A)  HGNC  Alliance
Mus musculus (house mouse) : Clec5a (C-type lectin domain family 5, member a)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clec5a (C-type lectin domain containing 5A)
Pan paniscus (bonobo/pygmy chimpanzee) : CLEC5A (C-type lectin domain containing 5A)
Canis lupus familiaris (dog) : CLEC5A (C-type lectin domain containing 5A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clec5a (C-type lectin domain containing 5A)
Sus scrofa (pig) : CLEC5A (C-type lectin domain containing 5A)
Chlorocebus sabaeus (African green monkey) : CLEC5A (C-type lectin domain containing 5A)
Heterocephalus glaber (naked mole-rat) : Clec5a (C-type lectin domain containing 5A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0468,810,330 - 68,819,921 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl468,808,359 - 68,819,928 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04133,597,708 - 133,607,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4468,174,953 - 68,183,934 (-)NCBIRGSC3.4rn4RGSC3.4
Celera464,398,299 - 64,407,282 (-)NCBICelera
Cytogenetic Map4q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Clec5a
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1584755
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.