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Gene: Clec5a (C-type lectin domain containing 5A) Rattus norvegicus
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Symbol: Clec5a
Name: C-type lectin domain containing 5A
Description: Predicted to have virus receptor activity. Predicted to be involved in several processes, including negative regulation of myeloid cell apoptotic process; osteoblast development; and positive regulation of cytokine secretion. Predicted to localize to the cell surface; cytosol; and plasma membrane. Orthologous to human CLEC5A (C-type lectin domain containing 5A); INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; tetrachloromethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-type lectin domain family 5 member A; C-type lectin domain family 5, member A; LOC679787; similar to C-type lectin domain family 5, member a isoform 2
Orthologs:
Homo sapiens (human) : CLEC5A (C-type lectin domain containing 5A)  HGNC  Alliance
Mus musculus (house mouse) : Clec5a (C-type lectin domain family 5, member a)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clec5a (C-type lectin domain containing 5A)
Pan paniscus (bonobo/pygmy chimpanzee) : CLEC5A (C-type lectin domain containing 5A)
Canis lupus familiaris (dog) : CLEC5A (C-type lectin domain containing 5A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clec5a (C-type lectin domain containing 5A)
Sus scrofa (pig) : CLEC5A (C-type lectin domain containing 5A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0468,810,330 - 68,819,921 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04133,597,708 - 133,607,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4468,174,953 - 68,183,934 (-)NCBIRGSC3.4rn4RGSC3.4
Celera464,398,299 - 64,407,282 (-)NCBICelera
Cytogenetic Map4q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clec5a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1584755
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.