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Gene: Slirp (SRA stem-loop interacting RNA binding protein) Rattus norvegicus
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Symbol: Slirp
Name: SRA stem-loop interacting RNA binding protein
Description: Predicted to have RNA binding activity. Predicted to be involved in several processes, including flagellated sperm motility; mitochondrion morphogenesis; and negative regulation of mitochondrial RNA catabolic process. Predicted to localize to the cytoplasm; ribonucleoprotein complex; and sperm flagellum. Orthologous to human SLIRP (SRA stem-loop interacting RNA binding protein); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; bisphenol A; fipronil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC688717; similar to CG33714-PB, isoform B; SRA stem-loop-interacting RNA-binding protein; SRA stem-loop-interacting RNA-binding protein, mitochondrial
Orthologs:
Homo sapiens (human) : SLIRP (SRA stem-loop interacting RNA binding protein)  HGNC  Alliance
Mus musculus (house mouse) : Slirp (SRA stem-loop interacting RNA binding protein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slirp (SRA stem-loop interacting RNA binding protein)
Pan paniscus (bonobo/pygmy chimpanzee) : SLIRP (SRA stem-loop interacting RNA binding protein)
Canis lupus familiaris (dog) : SLIRP (SRA stem-loop interacting RNA binding protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slirp (SRA stem-loop interacting RNA binding protein)
Sus scrofa (pig) : SLIRP (SRA stem-loop interacting RNA binding protein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.06111,476,768 - 111,486,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06120,757,482 - 120,766,753 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,682,052 - 111,691,083 (+)NCBIRGSC3.4rn4RGSC3.4
Celera6104,908,488 - 104,917,534 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Slirp
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1585290
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.