Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Ttc39c (tetratricopeptide repeat domain 39C) Rattus norvegicus
Analyze
Symbol: Ttc39c
Name: tetratricopeptide repeat domain 39C
CRRD ID: 1585423
Description: Predicted to be involved in cilium assembly and otolith morphogenesis. Orthologous to human TTC39C (tetratricopeptide repeat domain 39C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC686179; MGC125239; tetratricopeptide repeat protein 39C; TPR repeat protein 39C
Orthologs:
Homo sapiens (human) : TTC39C (tetratricopeptide repeat domain 39C)  HGNC  Alliance
Mus musculus (house mouse) : Ttc39c (tetratricopeptide repeat domain 39C)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ttc39c (tetratricopeptide repeat domain 39C)
Pan paniscus (bonobo/pygmy chimpanzee) : TTC39C (tetratricopeptide repeat domain 39C)
Canis lupus familiaris (dog) : TTC39C (tetratricopeptide repeat domain 39C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ttc39c (tetratricopeptide repeat domain 39C)
Sus scrofa (pig) : TTC39C (tetratricopeptide repeat domain 39C)
Chlorocebus sabaeus (African green monkey) : TTC39C (tetratricopeptide repeat domain 39C)
Heterocephalus glaber (naked mole-rat) : Ttc39c (tetratricopeptide repeat domain 39C)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0183,958,424 - 4,080,028 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,958,432 - 4,080,025 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,955,997 - 4,074,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera183,824,032 - 3,943,341 (+)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Ttc39c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1585423
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.