Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Pif1 (PIF1 5'-to-3' DNA helicase) Rattus norvegicus
Analyze
Symbol: Pif1
Name: PIF1 5'-to-3' DNA helicase
Description: Predicted to have several functions, including ATP binding activity; helicase activity; and magnesium ion binding activity. Predicted to be involved in DNA duplex unwinding; DNA replication; and negative regulation of DNA biosynthetic process. Predicted to localize to mitochondrion; nuclear chromosome, telomeric region; and replication fork. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase); INTERACTS WITH linsidomine; 1,2-dichloroethane (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATP-dependent DNA helicase PIF1; DNA repair and recombination helicase PIF1; LOC690796; PIF1/RRM3 DNA helicase-like protein; Pif1/Rrm3 DNA-helicase-like protein; similar to PIF1 homolog
Orthologs:
Homo sapiens (human) : PIF1 (PIF1 5'-to-3' DNA helicase)  HGNC  Alliance
Mus musculus (house mouse) : Pif1 (PIF1 5'-to-3' DNA helicase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pif1 (PIF1 5'-to-3' DNA helicase)
Pan paniscus (bonobo/pygmy chimpanzee) : PIF1 (PIF1 5'-to-3' DNA helicase)
Canis lupus familiaris (dog) : PIF1 (PIF1 5'-to-3' DNA helicase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pif1 (PIF1 5'-to-3' DNA helicase)
Sus scrofa (pig) : PIF1 (PIF1 5'-to-3' DNA helicase)
Chlorocebus sabaeus (African green monkey) : PIF1 (PIF1 5'-to-3' DNA helicase)
Heterocephalus glaber (naked mole-rat) : Pif1 (PIF1 5'-to-3' DNA helicase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0871,124,477 - 71,133,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl871,125,414 - 71,132,629 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0870,810,423 - 70,819,399 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4869,844,293 - 69,851,508 (+)NCBIRGSC3.4rn4RGSC3.4
Celera865,505,156 - 65,512,371 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Pif1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1586053
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.