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Gene: Trim62 (tripartite motif-containing 62) Rattus norvegicus
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Symbol: Trim62
Name: tripartite motif-containing 62
Description: Predicted to have ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of viral transcription; positive regulation of NF-kappaB transcription factor activity; and regulation of viral life cycle. Predicted to localize to cytoplasm. Orthologous to human TRIM62 (tripartite motif containing 62); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: E3 ubiquitin-protein ligase TRIM62; LOC313045; similar to tripartite motif-containing 62; tripartite motif-containing protein 62
Orthologs:
Homo sapiens (human) : TRIM62 (tripartite motif containing 62)  HGNC  Alliance
Mus musculus (house mouse) : Trim62 (tripartite motif-containing 62)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim62 (tripartite motif containing 62)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM62 (tripartite motif containing 62)
Canis lupus familiaris (dog) : TRIM62 (tripartite motif containing 62)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim62 (tripartite motif containing 62)
Sus scrofa (pig) : TRIM62 (tripartite motif containing 62)
Chlorocebus sabaeus (African green monkey) : TRIM62 (tripartite motif containing 62)
Heterocephalus glaber (naked mole-rat) : Trim62 (tripartite motif containing 62)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05147,068,725 - 147,099,024 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,069,616 - 147,095,242 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05150,799,760 - 150,830,499 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5139,714,974 - 139,746,021 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trim62
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1586169
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.