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Gene: Shoc1 (shortage in chiasmata 1) Rattus norvegicus
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Symbol: Shoc1
Name: shortage in chiasmata 1
Description: Predicted to have ATPase activity and single-stranded DNA binding activity. Predicted to be involved in resolution of meiotic recombination intermediates. Predicted to localize to the condensed nuclear chromosome. Orthologous to human SHOC1 (shortage in chiasmata 1); INTERACTS WITH bisphenol A; 17beta-estradiol (ortholog); 2-hydroxypropanoic acid (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: hypothetical protein LOC686050; LOC686050; uncharacterized protein C9orf84 homolog
Orthologs:
Homo sapiens (human) : SHOC1 (shortage in chiasmata 1)  HGNC  Alliance
Mus musculus (house mouse) : Shoc1 (shortage in chiasmata 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shoc1 (shortage in chiasmata 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SHOC1 (shortage in chiasmata 1)
Canis lupus familiaris (dog) : SHOC1 (shortage in chiasmata 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shoc1 (shortage in chiasmata 1)
Sus scrofa (pig) : SHOC1 (shortage in chiasmata 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0576,190,486 - 76,298,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0580,334,292 - 80,442,339 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,093,824 - 77,164,496 (-)NCBIRGSC3.4rn4RGSC3.4
Celera572,686,689 - 72,778,720 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Shoc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1586646
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.