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Gene: Shoc1 (shortage in chiasmata 1) Rattus norvegicus
Symbol: Shoc1
Name: shortage in chiasmata 1
Description: Predicted to have ATPase activity and single-stranded DNA binding activity. Predicted to be involved in resolution of meiotic recombination intermediates. Predicted to localize to the condensed nuclear chromosome. Orthologous to human SHOC1 (shortage in chiasmata 1); INTERACTS WITH bisphenol A; 17beta-estradiol (ortholog); 2-hydroxypropanoic acid (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: hypothetical protein LOC686050; LOC686050; uncharacterized protein C9orf84 homolog
Homo sapiens (human) : SHOC1 (shortage in chiasmata 1)  HGNC  Alliance
Mus musculus (house mouse) : Shoc1 (shortage in chiasmata 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shoc1 (shortage in chiasmata 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SHOC1 (shortage in chiasmata 1)
Canis lupus familiaris (dog) : SHOC1 (shortage in chiasmata 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shoc1 (shortage in chiasmata 1)
Sus scrofa (pig) : SHOC1 (shortage in chiasmata 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0576,190,486 - 76,298,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0580,334,292 - 80,442,339 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,093,824 - 77,164,496 (-)NCBIRGSC3.4rn4RGSC3.4
Celera572,686,689 - 72,778,720 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Shoc1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1586646
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.