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Gene: Sf3b5 (splicing factor 3b, subunit 5) Rattus norvegicus
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Symbol: Sf3b5
Name: splicing factor 3b, subunit 5
Description: Predicted to have RNA binding activity and splicing factor binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the nucleus. Orthologous to human SF3B5 (splicing factor 3b subunit 5); PARTICIPATES IN spliceosome pathway; INTERACTS WITH bisphenol A; cobalt dichloride; dibutyl phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC680891; similar to Splicing factor 3B subunit 5 (SF3b5) (Pre-mRNA splicing factor SF3b 10 kDa subunit); splicing factor 3B subunit 5
Orthologs:
Homo sapiens (human) : SF3B5 (splicing factor 3b subunit 5)  HGNC  Alliance
Mus musculus (house mouse) : Sf3b5 (splicing factor 3b, subunit 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sf3b5 (splicing factor 3b subunit 5)
Pan paniscus (bonobo/pygmy chimpanzee) : SF3B5 (splicing factor 3b subunit 5)
Canis lupus familiaris (dog) : SF3B5 (splicing factor 3b subunit 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sf3b5 (splicing factor 3b subunit 5)
Sus scrofa (pig) : SF3B5 (splicing factor 3b subunit 5)
Chlorocebus sabaeus (green monkey) : SF3B5 (splicing factor 3b subunit 5)
Heterocephalus glaber (naked mole-rat) : Sf3b5 (splicing factor 3b subunit 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.017,101,715 - 7,102,427 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17,101,715 - 7,102,426 (+)Ensembl
Rnor_5.018,739,573 - 8,740,285 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,746,652 - 7,747,354 (+)NCBIRGSC3.4rn4RGSC3.4
Celera15,856,835 - 5,857,547 (+)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sf3b5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1586993
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.