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Gene: Slc6a17 (solute carrier family 6 member 17) Rattus norvegicus
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Symbol: Slc6a17
Name: solute carrier family 6 member 17
Description: Predicted to have neurotransmitter:sodium symporter activity. Involved in neutral amino acid transport. Localizes to GABA-ergic synapse; glutamatergic synapse; and integral component of synaptic vesicle membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human SLC6A17 (solute carrier family 6 member 17); INTERACTS WITH bisphenol A; Brodifacoum; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Ntt4; orphan sodium- and chloride-dependent neurotransmitter transporter NTT4; sodium-dependent neurotransmitter transporter NTT4; sodium-dependent neutral amino acid transporter SLC6A17; solute carrier family 6 (neurotransmitter transporter), member 17; solute carrier family 6 (neutral amino acid transporter), member 17
Orthologs:
Homo sapiens (human) : SLC6A17 (solute carrier family 6 member 17)  HGNC  Alliance
Mus musculus (house mouse) : Slc6a17 (solute carrier family 6 (neurotransmitter transporter), member 17)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slc6a17 (solute carrier family 6 member 17)
Pan paniscus (bonobo/pygmy chimpanzee) : SLC6A17 (solute carrier family 6 member 17)
Canis lupus familiaris (dog) : SLC6A17 (solute carrier family 6 member 17)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slc6a17 (solute carrier family 6 member 17)
Sus scrofa (pig) : SLC6A17 (solute carrier family 6 member 17)
Chlorocebus sabaeus (African green monkey) : SLC6A17 (solute carrier family 6 member 17)
Heterocephalus glaber (naked mole-rat) : Slc6a17 (solute carrier family 6 member 17)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02210,249,663 - 210,299,770 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,249,663 - 210,299,770 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,723,068 - 229,770,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2187,756,311 - 187,804,478 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Slc6a17
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1587185
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.