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Gene: Pkd1l2 (polycystin 1 like 2) Rattus norvegicus
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Symbol: Pkd1l2
Name: polycystin 1 like 2
Description: Predicted to have calcium ion binding activity and carbohydrate binding activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to localize to integral component of membrane. Orthologous to human PKD1L2 (polycystin 1 like 2 (gene/pseudogene)); INTERACTS WITH glyphosate; tetrachloromethane; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC691069; LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 2; polycystic kidney disease 1-like 2; polycystic kidney disease protein 1-like 2; similar to polycystin 1-like 2
Orthologs:
Homo sapiens (human) : PKD1L2 (polycystin 1 like 2 (gene/pseudogene))  HGNC  Alliance
Mus musculus (house mouse) : Pkd1l2 (polycystic kidney disease 1 like 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pkd1l2 (polycystin 1 like 2)
Pan paniscus (bonobo/pygmy chimpanzee) : LOC100988147 (polycystic kidney disease protein 1-like 2)
Canis lupus familiaris (dog) : PKD1L2 (polycystin 1 like 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pkd1l2 (polycystin 1 like 2)
Sus scrofa (pig) : PKD1L2 (polycystin 1 like 2)
Chlorocebus sabaeus (African green monkey) : PKD1L2 (polycystin 1 like 2)
Heterocephalus glaber (naked mole-rat) : Pkd1l2 (polycystin 1 like 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01949,535,122 - 49,624,291 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,535,792 - 49,623,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01960,326,540 - 60,411,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,104,964 - 47,187,991 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1944,322,265 - 44,408,508 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pkd1l2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1588631
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.