Gene: Prdm5 (PR/SET domain 5) Rattus norvegicus
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Symbol: Prdm5
Name: PR/SET domain 5
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific, RNA polymerase II proximal promoter sequence-specific DNA binding activity, and repressing transcription factor binding activity; predicted to be involved in several processes, including cellular protein modification process, cellular response to leukemia inhibitory factor, and regulation of cellular biosynthetic process; predicted to colocalize with the nucleoplasm; orthologous to human PRDM5 (PR/SET domain 5); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC689788; PR domain 5; PR domain containing 5; PR domain zinc finger protein 5; similar to PR domain containing 5
Orthologs:
Homo sapiens (human) : PRDM5 (PR/SET domain 5)  HGNC  Alliance
Mus musculus (house mouse) : Prdm5 (PR domain containing 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prdm5 (PR/SET domain 5)
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM5 (PR/SET domain 5)
Canis lupus familiaris (dog) : PRDM5 (PR/SET domain 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm5 (PR/SET domain 5)
Sus scrofa (pig) : PRDM5 (PR/SET domain 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0496,659,062 - 96,810,816 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04161,443,531 - 161,604,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4495,448,787 - 95,620,031 (+)NCBIRGSC3.4rn4RGSC3.4
Celera489,805,717 - 89,965,943 (+)NCBICelera
Cytogenetic Map4q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prdm5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1588700
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.