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Gene: Prdm5 (PR/SET domain 5) Rattus norvegicus
Symbol: Prdm5
Name: PR/SET domain 5
Description: Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and repressing transcription factor binding activity. Predicted to be involved in several processes, including cellular response to leukemia inhibitory factor; histone modification; and negative regulation of transcription by RNA polymerase II. Predicted to localize to nuclear body and nucleolus. Orthologous to human PRDM5 (PR/SET domain 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acrylamide.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC689788; PR domain 5; PR domain containing 5; PR domain zinc finger protein 5; similar to PR domain containing 5
Homo sapiens (human) : PRDM5 (PR/SET domain 5)  HGNC  Alliance
Mus musculus (house mouse) : Prdm5 (PR domain containing 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prdm5 (PR/SET domain 5)
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM5 (PR/SET domain 5)
Canis lupus familiaris (dog) : PRDM5 (PR/SET domain 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm5 (PR/SET domain 5)
Sus scrofa (pig) : PRDM5 (PR/SET domain 5)
Chlorocebus sabaeus (African green monkey) : PRDM5 (PR/SET domain 5)
Heterocephalus glaber (naked mole-rat) : Prdm5 (PR/SET domain 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.0496,659,062 - 96,810,816 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl496,659,084 - 96,812,263 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04161,443,531 - 161,604,796 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4495,448,787 - 95,620,031 (+)NCBIRGSC3.4rn4RGSC3.4
Celera489,805,717 - 89,965,943 (+)NCBICelera
Cytogenetic Map4q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Prdm5
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1588700
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.