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Gene: Upf1 (UPF1, RNA helicase and ATPase) Rattus norvegicus
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Symbol: Upf1
Name: UPF1, RNA helicase and ATPase
Description: Predicted to have RNA helicase activity; chromatin binding activity; and nucleic acid binding activity. Predicted to be involved in several processes, including DNA metabolic process; cellular response to interleukin-1; and regulation of gene expression. Predicted to localize to the chromatin; cytoplasm; and nucleus. Orthologous to human UPF1 (UPF1 RNA helicase and ATPase); INTERACTS WITH acrylamide; bisphenol A; vinclozolin.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC684558; regulator of nonsense transcripts 1; similar to regulator of nonsense transcripts 1; UPF1 regulator of nonsense transcripts homolog; UPF1 regulator of nonsense transcripts homolog (yeast)
Orthologs:
Homo sapiens (human) : UPF1 (UPF1 RNA helicase and ATPase)  HGNC  Alliance
Mus musculus (house mouse) : Upf1 (UPF1 regulator of nonsense transcripts homolog (yeast))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Upf1 (UPF1 RNA helicase and ATPase)
Pan paniscus (bonobo/pygmy chimpanzee) : UPF1 (UPF1 RNA helicase and ATPase)
Canis lupus familiaris (dog) : UPF1 (UPF1 RNA helicase and ATPase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Upf1 (UPF1 RNA helicase and ATPase)
Sus scrofa (pig) : UPF1 (UPF1 RNA helicase and ATPase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,824,888 - 20,845,632 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,824,864 - 20,845,243 (+)Ensembl
Rnor_5.01620,677,403 - 20,698,177 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1619,266,888 - 19,287,629 (+)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Upf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1589127
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-01-07
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.