Gene: Col4a6 (collagen type IV alpha 6 chain) Rattus norvegicus
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Symbol: Col4a6
Name: collagen type IV alpha 6 chain
Description: Predicted to have structural molecule activity; predicted to be involved in cellular response to amino acid stimulus, collagen-activated tyrosine kinase receptor signaling pathway, and extracellular matrix organization; predicted to localize to the collagen type IV trimer; orthologous to human COL4A6 (collagen type IV alpha 6 chain); INTERACTS WITH lead diacetate; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-6(IV) chain; collagen, type IV, alpha 6; LOC363458; LOW QUALITY PROTEIN: collagen alpha-6(IV) chain; similar to procollagen, type IV, alpha 6
Orthologs:
Homo sapiens (human) : COL4A6 (collagen type IV alpha 6 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col4a6 (collagen, type IV, alpha 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col4a6 (collagen type IV alpha 6 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL4A6 (collagen type IV alpha 6 chain)
Canis lupus familiaris (dog) : COL4A6 (collagen type IV alpha 6 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col4a6 (collagen type IV alpha 6 chain)
Sus scrofa (pig) : COL4A6 (collagen type IV alpha 6 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X112,405,647 - 112,768,337 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X110,869,083 - 111,225,229 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X37,316,545 - 37,485,511 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX104,184,917 - 104,528,021 (-)NCBICelera
Cytogenetic MapXq33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col4a6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1589724
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.