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Gene: Col25a1 (collagen type XXV alpha 1 chain) Rattus norvegicus
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Symbol: Col25a1
Name: collagen type XXV alpha 1 chain
Description: Predicted to have amyloid-beta binding activity; extracellular matrix structural constituent; and heparin binding activity. Predicted to be involved in axonogenesis involved in innervation and extracellular matrix organization. Predicted to localize to the extracellular matrix; extracellular space; and integral component of plasma membrane. Human ortholog(s) of this gene implicated in congenital fibrosis of the extraocular muscles. Orthologous to human COL25A1 (collagen type XXV alpha 1 chain); INTERACTS WITH 17alpha-ethynylestradiol; valproic acid; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(XXV) chain; collagen, type XXV, alpha 1; LOC687064; similar to collagen, type XXV, alpha 1 isoform 1
Orthologs:
Homo sapiens (human) : COL25A1 (collagen type XXV alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col25a1 (collagen, type XXV, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col25a1 (collagen type XXV alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL25A1 (collagen type XXV alpha 1 chain)
Canis lupus familiaris (dog) : COL25A1 (collagen type XXV alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col25a1 (collagen type XXV alpha 1 chain)
Sus scrofa (pig) : COL25A1 (collagen type XXV alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02235,515,364 - 235,705,448 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02254,067,074 - 254,256,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2211,033,464 - 211,420,527 (+)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col25a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1590105
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.