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Gene: Col25a1 (collagen type XXV alpha 1 chain) Rattus norvegicus
Symbol: Col25a1
Name: collagen type XXV alpha 1 chain
Description: Predicted to have amyloid-beta binding activity; extracellular matrix structural constituent; and heparin binding activity. Predicted to be involved in axonogenesis involved in innervation and extracellular matrix organization. Predicted to localize to the extracellular matrix; extracellular space; and integral component of plasma membrane. Human ortholog(s) of this gene implicated in congenital fibrosis of the extraocular muscles. Orthologous to human COL25A1 (collagen type XXV alpha 1 chain); INTERACTS WITH 17alpha-ethynylestradiol; valproic acid; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(XXV) chain; collagen, type XXV, alpha 1; LOC687064; similar to collagen, type XXV, alpha 1 isoform 1
Homo sapiens (human) : COL25A1 (collagen type XXV alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col25a1 (collagen, type XXV, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col25a1 (collagen type XXV alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL25A1 (collagen type XXV alpha 1 chain)
Canis lupus familiaris (dog) : COL25A1 (collagen type XXV alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col25a1 (collagen type XXV alpha 1 chain)
Sus scrofa (pig) : COL25A1 (collagen type XXV alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.02235,515,364 - 235,705,448 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02254,067,074 - 254,256,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2211,033,464 - 211,420,527 (+)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Col25a1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1590105
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.