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Gene: H1f5 (H1.5 linker histone, cluster member) Rattus norvegicus
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Symbol: H1f5
Name: H1.5 linker histone, cluster member
Description: Predicted to have double-stranded DNA binding activity; histone deacetylase binding activity; and nucleosomal DNA binding activity. Predicted to be involved in several processes, including DNA packaging; protein stabilization; and regulation of nucleobase-containing compound metabolic process. Predicted to localize to the nuclear euchromatin and nuclear heterochromatin. Orthologous to human HIST1H1B (histone cluster 1 H1 family member b); INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog); 2,2',4,4',5,5'-hexachlorobiphenyl (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Hist1h1b; histone cluster 1 H1 family member b; histone cluster 1, H1b; histone H1.5; LOC680522; similar to Histone H1.5 (H1 VAR.5) (H1b)
Orthologs:
Homo sapiens (human) : H1-5 (H1.5 linker histone, cluster member)  HGNC  Alliance
Mus musculus (house mouse) : H1f5 (H1.5 linker histone, cluster member)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : H1-5 (H1.5 linker histone, cluster member)
Pan paniscus (bonobo/pygmy chimpanzee) : LOC100983953 (histone H1.5)
Canis lupus familiaris (dog) : H1-5 (H1.5 linker histone, cluster member)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : H1-5 (H1.5 linker histone, cluster member)
Sus scrofa (pig) : H1-5 (H1.5 linker histone, cluster member)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01744,766,313 - 44,766,981 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01758,699,738 - 58,700,406 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,360,616 - 50,361,284 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1753,734,625 - 53,735,293 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on H1f5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1590638
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-09-24
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.