Gene: Pcdh15 (protocadherin related 15) Rattus norvegicus
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Symbol: Pcdh15
Name: protocadherin related 15
Description: Exhibits protein N-terminus binding activity; involved in response to calcium ion; predicted to localize to several cellular components, including the cytoplasm, extracellular space, and neuron projection; orthologous to human PCDH15 (protocadherin related 15); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; INTERACTS WITH atrazine; bisphenol A; Monobutylphthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC690865; protocadherin 15; protocadherin-15; similar to protocadherin 15
Orthologs:
Homo sapiens (human) : PCDH15 (protocadherin related 15)  HGNC  Alliance
Mus musculus (house mouse) : Pcdh15 (protocadherin 15)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pcdh15 (protocadherin related 15)
Pan paniscus (bonobo/pygmy chimpanzee) : PCDH15 (protocadherin related 15)
Canis lupus familiaris (dog) : PCDH15 (protocadherin related 15)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : LOC101965031 (protocadherin-15)
Sus scrofa (pig) : PCDH15 (protocadherin related 15)
more info ...
Is Marker For: Strains:   KCI/Kyo  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02014,952,213 - 15,334,745 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02017,138,580 - 17,521,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02018,712,995 - 19,021,206 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42014,507,804 - 15,240,479 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2015,459,406 - 16,139,466 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Pcdh15
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1590969
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.