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Gene: Pcdh15 (protocadherin related 15) Rattus norvegicus
Symbol: Pcdh15
Name: protocadherin related 15
Description: Exhibits protein N-terminus binding activity. Involved in response to calcium ion. Predicted to localize to several cellular components, including extracellular space; photoreceptor outer segment; and stereocilium. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Orthologous to human PCDH15 (protocadherin related 15); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; INTERACTS WITH atrazine; bisphenol A; glyphosate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC690865; protocadherin 15; protocadherin-15; similar to protocadherin 15
Homo sapiens (human) : PCDH15 (protocadherin related 15)  HGNC  Alliance
Mus musculus (house mouse) : Pcdh15 (protocadherin 15)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pcdh15 (protocadherin related 15)
Pan paniscus (bonobo/pygmy chimpanzee) : PCDH15 (protocadherin related 15)
Canis lupus familiaris (dog) : PCDH15 (protocadherin related 15)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : LOC101965031 (protocadherin-15)
Sus scrofa (pig) : PCDH15 (protocadherin related 15)
Chlorocebus sabaeus (African green monkey) : PCDH15 (protocadherin related 15)
Heterocephalus glaber (naked mole-rat) : Pcdh15 (protocadherin related 15)
more info ...
Is Marker For: Strains:   KCI/Kyo  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.02014,952,213 - 15,334,745 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2014,952,213 - 15,334,745 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02018,712,995 - 19,021,206 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02017,138,580 - 17,521,597 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42014,507,804 - 15,240,479 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2015,459,406 - 16,139,466 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
More on Pcdh15
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1590969
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.