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Gene: Kdm4d (lysine demethylase 4D) Rattus norvegicus
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Symbol: Kdm4d
Name: lysine demethylase 4D
Description: Predicted to have chromatin DNA binding activity; damaged DNA binding activity; and histone demethylase activity (H3-K9 specific). Predicted to be involved in several processes, including chromatin organization; positive regulation of double-strand break repair via nonhomologous end joining; and regulation of protein modification process. Predicted to localize to the histone methyltransferase complex; pericentric heterochromatin; and site of double-strand break. Orthologous to several human genes including KDM4D (lysine demethylase 4D); INTERACTS WITH bisphenol A; decabromodiphenyl ether; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: jmjC domain-containing histone demethylation protein 3D; jumonji domain-containing protein 2D; LOC689582; lysine (K)-specific demethylase 4D; lysine-specific demethylase 4D; MGC156756; similar to jumonji domain containing 2D
Orthologs:
Homo sapiens (human) : KDM4D (lysine demethylase 4D)  HGNC  Alliance
Mus musculus (house mouse) : Kdm4d (lysine (K)-specific demethylase 4D)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Kdm4d (lysine demethylase 4D)
Pan paniscus (bonobo/pygmy chimpanzee) : KDM4D (lysine demethylase 4D)
Canis lupus familiaris (dog) : KDM4D (lysine demethylase 4D)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Kdm4d (lysine demethylase 4D)
Sus scrofa (pig) : LOC100627380 (lysine-specific demethylase 4D-like)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0812,968,192 - 12,993,651 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0813,454,239 - 13,456,523 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4811,222,556 - 11,247,715 (-)NCBIRGSC3.4rn4RGSC3.4
Celera812,774,633 - 12,798,709 (-)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Kdm4d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1591045
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.