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Gene: Tbr1 (T-box brain transcription factor 1) Rattus norvegicus
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Symbol: Tbr1
Name: T-box brain transcription factor 1
Description: Exhibits protein kinase binding activity. Involved in cerebral cortex development. Localizes to nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human TBR1 (T-box brain transcription factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC680427; similar to T-box brain gene 1; T-box brain gene 1; T-box brain protein 1; T-box, brain, 1; T-box, brain, 1-like
Orthologs:
Homo sapiens (human) : TBR1 (T-box brain transcription factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Tbr1 (T-box brain transcription factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tbr1 (T-box brain transcription factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TBR1 (T-box brain transcription factor 1)
Canis lupus familiaris (dog) : TBR1 (T-box brain transcription factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tbr1 (T-box brain transcription factor 1)
Sus scrofa (pig) : TBR1 (T-box brain transcription factor 1)
Chlorocebus sabaeus (African green monkey) : TBR1 (T-box brain transcription factor 1)
Heterocephalus glaber (naked mole-rat) : Tbr1 (T-box brain transcription factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0347,677,720 - 47,685,902 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl347,677,720 - 47,685,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0354,349,276 - 54,356,654 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4343,647,046 - 43,655,746 (-)NCBIRGSC3.4rn4RGSC3.4
Celera346,019,111 - 46,026,902 (+)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Tbr1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1591773
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.