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Gene: Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide) Rattus norvegicus
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Symbol: Snrpd2
Name: small nuclear ribonucleoprotein D2 polypeptide
Description: Exhibits U1 snRNP binding activity. Predicted to be involved in spliceosomal snRNP assembly. Localizes to the U1 snRNP. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide); PARTICIPATES IN spliceosome pathway; INTERACTS WITH bisphenol A; cadmium dichloride; flutamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC680309; similar to small nuclear ribonucleoprotein D2; small nuclear ribonucleoprotein D2; small nuclear ribonucleoprotein Sm D2
Orthologs:
Homo sapiens (human) : SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide)  HGNC  Alliance
Mus musculus (house mouse) : Snrpd2 (small nuclear ribonucleoprotein D2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide)
Pan paniscus (bonobo/pygmy chimpanzee) : SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide)
Canis lupus familiaris (dog) : SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide)
Sus scrofa (pig) : SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide)
Chlorocebus sabaeus (green monkey) : SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide)
Heterocephalus glaber (naked mole-rat) : Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0180,057,140 - 80,059,990 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,056,755 - 80,059,996 (+)Ensembl
Rnor_5.0181,324,033 - 81,326,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,509,142 - 78,511,992 (+)NCBIRGSC3.4rn4RGSC3.4
Celera173,264,040 - 73,266,890 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Snrpd2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1593018
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.