Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Opn3 (opsin 3) Rattus norvegicus
Analyze
Symbol: Opn3
Name: opsin 3
CRRD ID: 1594385
Description: Predicted to have 11-cis retinal binding activity; G protein-coupled photoreceptor activity; and all-trans retinal binding activity. Predicted to be involved in several processes, including cellular response to UV-A; positive regulation of glucose import; and regulation of melanin biosynthetic process. Predicted to localize to cytoplasm; integral component of plasma membrane; and photoreceptor outer segment. Orthologous to human OPN3 (opsin 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC498289; opsin-3; similar to Opsin-3 (Encephalopsin) (Panopsin)
Orthologs:
Homo sapiens (human) : OPN3 (opsin 3)  HGNC  Alliance
Mus musculus (house mouse) : Opn3 (opsin 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Opn3 (opsin 3)
Pan paniscus (bonobo/pygmy chimpanzee) : OPN3 (opsin 3)
Canis lupus familiaris (dog) : OPN3 (opsin 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Opn3 (opsin 3)
Chlorocebus sabaeus (African green monkey) : OPN3 (opsin 3)
Heterocephalus glaber (naked mole-rat) : Opn3 (opsin 3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01393,716,481 - 93,746,994 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1393,716,481 - 93,746,994 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01398,180,840 - 98,211,263 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41391,396,311 - 91,427,005 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1387,187,867 - 87,218,156 (-)NCBICelera
Cytogenetic Map13q25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Opn3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1594385
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.