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Gene: Pygo1 (pygopus family PHD finger 1) Rattus norvegicus
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Symbol: Pygo1
Name: pygopus family PHD finger 1
Description: Predicted to have methylated histone binding activity. Predicted to be involved in several processes, including animal organ development; protein localization to nucleus; and spermatid nucleus differentiation. Predicted to localize to the nucleus. Orthologous to human PYGO1 (pygopus family PHD finger 1); INTERACTS WITH 17alpha-ethynylestradiol; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: INFERRED
Also known as: LOC691857; pygopus 1; pygopus homolog 1; similar to Pygopus homolog 1
Orthologs:
Homo sapiens (human) : PYGO1 (pygopus family PHD finger 1)  HGNC  Alliance
Mus musculus (house mouse) : Pygo1 (pygopus 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pygo1 (pygopus family PHD finger 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PYGO1 (pygopus family PHD finger 1)
Canis lupus familiaris (dog) : PYGO1 (pygopus family PHD finger 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pygo1 (pygopus family PHD finger 1)
Sus scrofa (pig) : PYGO1 (pygopus family PHD finger 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0879,607,013 - 79,625,188 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0873,464,585 - 73,482,239 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4877,660,208 - 77,820,894 (+)NCBIRGSC3.4rn4RGSC3.4
Celera868,069,742 - 68,086,746 (-)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pygo1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1594620
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.