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Gene: Spdef (SAM pointed domain containing ets transcription factor) Rattus norvegicus
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Symbol: Spdef
Name: SAM pointed domain containing ets transcription factor
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in several processes, including columnar/cuboidal epithelial cell differentiation; regulation of cell fate commitment; and regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human SPDEF (SAM pointed domain containing ETS transcription factor); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC689210; SAM pointed domain-containing Ets transcription factor; similar to SAM pointed domain containing ets transcription factor
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0207,292,823 - 7,308,053 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,292,824 - 7,307,284 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,495,168 - 9,509,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,927,866 - 5,942,091 (-)NCBIRGSC3.4rn4RGSC3.4
Celera207,333,751 - 7,348,087 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Spdef
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1594842
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.