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Gene: Col13a1 (collagen type XIII alpha 1 chain) Rattus norvegicus
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Symbol: Col13a1
Name: collagen type XIII alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent and heparin binding activity. Predicted to be involved in several processes, including cell-matrix adhesion; endochondral ossification; and extracellular matrix organization. Predicted to localize to the cell-cell junction; extracellular matrix; and extracellular space. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 19. Orthologous to human COL13A1 (collagen type XIII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cobalt dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: collagen alpha-1(XIII) chain; collagen, type XIII, alpha 1; LOC499431; procollagen, type XIII, alpha 1; similar to alpha 1 type XIII collagen isoform 17
Orthologs:
Homo sapiens (human) : COL13A1 (collagen type XIII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col13a1 (collagen, type XIII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col13a1 (collagen type XIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL13A1 (collagen type XIII alpha 1 chain)
Canis lupus familiaris (dog) : COL13A1 (collagen type XIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col13a1 (collagen type XIII alpha 1 chain)
Sus scrofa (pig) : COL13A1 (collagen type XIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02031,456,502 - 31,598,360 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02033,254,962 - 33,395,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,208,654 - 29,348,751 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2031,209,120 - 31,348,066 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col13a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1595704
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.