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Gene: Col13a1 (collagen type XIII alpha 1 chain) Rattus norvegicus
Symbol: Col13a1
Name: collagen type XIII alpha 1 chain
CRRD ID: 1595704
Description: Predicted to have extracellular matrix structural constituent and heparin binding activity. Predicted to be involved in several processes, including collagen fibril organization; endochondral ossification; and notochord development. Predicted to localize to several cellular components, including cell-cell junction; collagen trimer; and extracellular space. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 19. Orthologous to human COL13A1 (collagen type XIII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; cobalt dichloride.
Type: protein-coding
Also known as: collagen alpha-1(XIII) chain; collagen, type XIII, alpha 1; LOC499431; procollagen, type XIII, alpha 1; similar to alpha 1 type XIII collagen isoform 17
Homo sapiens (human) : COL13A1 (collagen type XIII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col13a1 (collagen, type XIII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col13a1 (collagen type XIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL13A1 (collagen type XIII alpha 1 chain)
Canis lupus familiaris (dog) : COL13A1 (collagen type XIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col13a1 (collagen type XIII alpha 1 chain)
Sus scrofa (pig) : COL13A1 (collagen type XIII alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL13A1 (collagen type XIII alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col13a1 (collagen type XIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.02031,456,502 - 31,598,360 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,456,852 - 31,598,118 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,254,962 - 33,395,070 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,208,654 - 29,348,751 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2031,209,120 - 31,348,066 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Col13a1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1595704
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.