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Gene: Hoxc9 (homeobox C9) Rattus norvegicus
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Symbol: Hoxc9
Name: homeobox C9
Description: Predicted to have sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and embryonic skeletal system morphogenesis. Predicted to localize to the aggresome and nucleoplasm. Orthologous to human HOXC9 (homeobox C9); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; acrylamide; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeo box C9; homeobox protein Hox-C9; Hoxc8; LOC300264
Orthologs:
Homo sapiens (human) : HOXC9 (homeobox C9)  HGNC  Alliance
Mus musculus (house mouse) : Hoxc9 (homeobox C9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxc9 (homeobox C9)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXC9 (homeobox C9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxc9 (homeobox C9)
Sus scrofa (pig) : HOXC9 (homeobox C9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07144,592,462 - 144,598,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07142,383,988 - 142,390,164 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,745,173 - 141,775,242 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7130,544,848 - 130,547,525 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Hoxc9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1595784
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.