Gene: RT1-M5 (RT1 class Ib, locus M5) Rattus norvegicus
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Symbol: RT1-M5
Name: RT1 class Ib, locus M5
Description: Predicted to have peptide antigen binding activity and signaling receptor binding activity; predicted to be involved in several processes, including antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent, antigen processing and presentation of endogenous peptide antigen via MHC class Ib, and immune response; predicted to localize to the external side of plasma membrane and extracellular space; orthologous to several human genes including HLA-A (major histocompatibility complex, class I, A), HLA-B (major histocompatibility complex, class I, B), and HLA-C (major histocompatibility complex, class I, C); INTERACTS WITH 6-propyl-2-thiouracil; aflatoxin B1; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Hla-f; LOC499400; major histocompatibility complex, class I, F; RGD1560260; RT1 class Ib gene, locus M5; RT1 class Ib, locus M5 (mapped); RT1-M5_mapped; RT1.M5; similar to RT1 class I, M5
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0202,038,158 - 2,040,422 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0204,078,537 - 4,080,801 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,638,276 - 1,640,540 (-)NCBIRGSC3.4rn4RGSC3.4
Celera202,254,856 - 2,257,120 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on RT1-M5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1595816
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.