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Gene: Hmgb4 (high-mobility group box 4) Rattus norvegicus
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Symbol: Hmgb4
Name: high-mobility group box 4
Description: Predicted to have DNA binding activity, bending and transcription factor binding activity. Predicted to be involved in several processes, including positive regulation of cellular metabolic process; positive regulation of cytokine production; and regulation of signal transduction. Predicted to localize to the cytoplasm and nuclear chromatin. Orthologous to human HMGB4 (high mobility group box 4); INTERACTS WITH bisphenol A; furan; lead nitrate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: high mobility group protein B4; LOC685271; similar to RIKEN cDNA 1700001F22
Orthologs:
Homo sapiens (human) : HMGB4 (high mobility group box 4)  HGNC  Alliance
Mus musculus (house mouse) : Hmgb4 (high-mobility group box 4)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hmgb4 (high mobility group box 4)
Pan paniscus (bonobo/pygmy chimpanzee) : HMGB4 (high mobility group box 4)
Canis lupus familiaris (dog) : HMGB4 (high mobility group box 4)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hmgb4 (high mobility group box 4)
Sus scrofa (pig) : HMGB4 (high mobility group box 4)
more info ...
Related Pseudogenes: LOC688646  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05146,445,545 - 146,446,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05150,186,040 - 150,186,722 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45147,486,501 - 147,487,183 (-)NCBIRGSC3.4rn4RGSC3.4
Celera5139,102,413 - 139,103,095 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hmgb4
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1596426
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.