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Gene: Trim38 (tripartite motif containing 38) Rattus norvegicus
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Symbol: Trim38
Name: tripartite motif containing 38
Description: Predicted to be involved in several processes, including cellular protein metabolic process; positive regulation of NF-kappaB transcription factor activity; and positive regulation of viral life cycle. Orthologous to human TRIM38 (tripartite motif containing 38); INTERACTS WITH (S)-colchicine (ortholog); 1,2-dichloroethane (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC680019; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM38; similar to tripartite motif-containing 38
Orthologs:
Homo sapiens (human) : TRIM38 (tripartite motif containing 38)  HGNC  Alliance
Mus musculus (house mouse) : Trim38 (tripartite motif-containing 38)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM38 (tripartite motif containing 38)
Canis lupus familiaris (dog) : TRIM38 (tripartite motif containing 38)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim38 (tripartite motif containing 38)
Sus scrofa (pig) : TRIM38 (tripartite motif containing 38)
Chlorocebus sabaeus (African green monkey) : TRIM38 (tripartite motif containing 38)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01743,600,006 - 43,607,879 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01745,454,492 - 45,462,066 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,533,590 - 48,541,164 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1740,983,646 - 40,991,519 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)

Expression


Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trim38
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1596868
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.