Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Tsen54 (tRNA splicing endonuclease subunit 54) Rattus norvegicus
Analyze
Symbol: Tsen54
Name: tRNA splicing endonuclease subunit 54
Description: Predicted to contribute to tRNA-intron endonuclease activity. Predicted to be involved in tRNA-type intron splice site recognition and cleavage. Predicted to localize to the tRNA-intron endonuclease complex. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2A; pontocerebellar hypoplasia type 4; and pontocerebellar hypoplasia type 5. Orthologous to human TSEN54 (tRNA splicing endonuclease subunit 54); PARTICIPATES IN tRNA maturation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC690308; similar to tRNA-splicing endonuclease subunit Sen54 (tRNA-intron endonuclease Sen54); tRNA splicing endonuclease 54 homolog; tRNA splicing endonuclease 54 homolog (S. cerevisiae); tRNA-splicing endonuclease subunit Sen54; TSEN54 tRNA splicing endonuclease subunit
Orthologs:
Homo sapiens (human) : TSEN54 (tRNA splicing endonuclease subunit 54)  HGNC  Alliance
Mus musculus (house mouse) : Tsen54 (tRNA splicing endonuclease subunit 54)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tsen54 (tRNA splicing endonuclease subunit 54)
Pan paniscus (bonobo/pygmy chimpanzee) : TSEN54 (tRNA splicing endonuclease subunit 54)
Canis lupus familiaris (dog) : TSEN54 (tRNA splicing endonuclease subunit 54)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tsen54 (tRNA splicing endonuclease subunit 54)
Sus scrofa (pig) : TSEN54 (tRNA splicing endonuclease subunit 54)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010104,358,401 - 104,366,926 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010103,919,097 - 103,927,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,916,407 - 105,923,991 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1099,617,504 - 99,625,088 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Tsen54
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1597379
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.