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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - ClinVar | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Monoclonal B-Cell Lymphocytosis | ISO | RGD:731405 | 8554872 | ClinVar Annotator: match by term: Monoclonal B-Cell Lymphocytosis | ClinVar | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type I Ehlers-Danlos syndrome | ISO | RGD:731405 | 8554872 | ClinVar Annotator: match by term: Ehlers-Danlos syndrome, classic type | ClinVar | PMID:28492532 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsMolecular Pathway AnnotationsPhenotype AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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Phenotype Annotations
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References - curated| 1. | Liu E, etal., Cancer Res. 2000 May 1;60(9):2361-4. |
| 2. | Pipeline to import KEGG annotations from KEGG into RGD |
| 3. | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 4. | RGD automated import pipeline |
| 5. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 6. | RGD automated import pipeline for gene-chemical interactions |
| 7. | Rufanova VA, etal., Can J Physiol Pharmacol. 2010 Aug;88(8):808-16. doi: 10.1139/Y10-056. |
| 8. | Rufanova VA, etal., Kidney Int. 2009 Jan;75(1):31-40. doi: 10.1038/ki.2008.448. Epub 2008 Sep 10. |
| 9. | Satoh T Small GTPases. 2014;5:e28102. doi: 10.4161/sgtp.28102. Epub 2014 Mar 10. |
References - uncurated| PubMed | 7797522 8889548 8978305 9626493 10349636 10922068 11042159 11069064 11076861 11217851 11309621 11432821 11485308 11804588 11909944 12466202 12466851 12477932 12520002 12671687 12697763 12697906 12904583 14610273 14712229 15062102 15102471 15480424 16141072 16141073 16443220 16455755 16602821 16858399 17826737 17967808 18180377 18287559 18506028 18799693 19925863 20436929 20697350 21267068 21677750 22351125 22499769 22659131 25621495 25982384 26133694 26212757 27111087 |
Comparative Map Data| Rapgef1 (Mus musculus - house mouse) |
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| RAPGEF1 (Homo sapiens - human) |
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| Rapgef1 (Rattus norvegicus - Norway rat) |
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| Rapgef1 (Chinchilla lanigera - long-tailed chinchilla) |
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| RAPGEF1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| RAPGEF1 (Canis lupus familiaris - dog) |
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| Rapgef1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| RAPGEF1 (Sus scrofa - pig) |
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Position Markers| Rapgef1 |
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| UniSTS:234364 |
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| UniSTS:224268 |
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| UniSTS:225096 |
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| Rapgef1 |
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| Rapgef1 |
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QTLs in Region (GRCm38)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Nucleotide Sequences| RefSeq Transcripts | NM_001039086 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NM_001039087 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_001362702 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| NM_054050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497582 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497583 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497584 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497585 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497586 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497587 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497589 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497590 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006497592 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030246481 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030246482 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030246483 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030246484 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030246485 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030246487 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_030246488 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AF348669 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AK047071 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK075689 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK077034 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK147468 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK147470 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK147506 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK147696 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AL845323 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC023453 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC034081 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC039756 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC129881 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH466542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_001039086 ⟹ NP_001034175 | ||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
GGGCTTCCGGCAGGTGGCGCCGTGGCCGCGGGGCCCAGGCCGGCGGGCGGGCGGCGGCGCGGCGhide sequence |
| RefSeq Acc Id: | NM_001039087 ⟹ NP_001034176 | ||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
GGGCTTCCGGCAGGTGGCGCCGTGGCCGCGGGGCCCAGGCCGGCGGGCGGGCGGCGGCGCGGCGhide sequence |
| RefSeq Acc Id: | NM_001362702 ⟹ NP_001349631 | |||||||||
| RefSeq Status: | VALIDATED | |||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | NM_054050 ⟹ NP_473391 | ||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
GGGCTTCCGGCAGGTGGCGCCGTGGCCGCGGGGCCCAGGCCGGCGGGCGGGCGGCGGCGCGGCGhide sequence |
| RefSeq Acc Id: | XM_006497582 ⟹ XP_006497645 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTGCTTTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTThide sequence |
| RefSeq Acc Id: | XM_006497583 ⟹ XP_006497646 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TCCGGCAGGTGGCGCCGTGGCCGCGGGGCCCAGGCCGGCGGGCGGGCGGCGGCGCGGCGCTGCGhide sequence |
| RefSeq Acc Id: | XM_006497584 ⟹ XP_006497647 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTGCTTTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTThide sequence |
| RefSeq Acc Id: | XM_006497585 ⟹ XP_006497648 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TGCTTTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTTGhide sequence |
| RefSeq Acc Id: | XM_006497586 ⟹ XP_006497649 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TGCTTTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTTGhide sequence |
| RefSeq Acc Id: | XM_006497587 ⟹ XP_006497650 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTGCTTTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTThide sequence |
| RefSeq Acc Id: | XM_006497589 ⟹ XP_006497652 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTTTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTTGTChide sequence |
| RefSeq Acc Id: | XM_006497590 ⟹ XP_006497653 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CTTTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTTGTChide sequence |
| RefSeq Acc Id: | XM_006497592 ⟹ XP_006497655 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
TTCCTGAGGGTGTGTCAGCCCTCCTGGAGCTCTGCCTGAGGCTGCTGGGTCATTGGGTTGTCCThide sequence |
| RefSeq Acc Id: | XM_030246481 ⟹ XP_030102341 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | XM_030246482 ⟹ XP_030102342 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | XM_030246483 ⟹ XP_030102343 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | XM_030246484 ⟹ XP_030102344 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | XM_030246485 ⟹ XP_030102345 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | XM_030246487 ⟹ XP_030102347 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| RefSeq Acc Id: | XM_030246488 ⟹ XP_030102348 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_001034175 | (Get FASTA) | NCBI Sequence Viewer |
| NP_001034176 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_001349631 | (Get FASTA) | NCBI Sequence Viewer | |
| NP_473391 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497645 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497646 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497647 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497648 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497649 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497650 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497652 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497653 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006497655 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030102341 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030102342 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030102343 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030102344 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030102345 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030102347 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_030102348 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH23453 | (Get FASTA) | NCBI Sequence Viewer |
| AAI29882 | (Get FASTA) | NCBI Sequence Viewer | |
| AAK97373 | (Get FASTA) | NCBI Sequence Viewer | |
| BAC36578 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE27934 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE27936 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE27960 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE28079 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE43330 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE43355 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL08415 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_001034176 ⟸ NM_001039087 |
| - Peptide Label: | isoform 1 |
| - UniProtKB: | Q3UHC1 (UniProtKB/TrEMBL), Q8C5V7 (UniProtKB/TrEMBL) |
| - Sequence: |
MSSGLGLRRSPEMSGKIEKADSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPVhide sequence |
| RefSeq Acc Id: | NP_473391 ⟸ NM_054050 |
| - Peptide Label: | isoform 3 |
| - UniProtKB: | Q3UHC1 (UniProtKB/TrEMBL), Q8C5V7 (UniProtKB/TrEMBL), Q91ZZ2 (UniProtKB/TrEMBL) |
| - Sequence: |
MSSGLGLRRSPEMSGKIEKADSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPVhide sequence |
| RefSeq Acc Id: | NP_001034175 ⟸ NM_001039086 |
| - Peptide Label: | isoform 2 |
| - UniProtKB: | Q3UGX8 (UniProtKB/TrEMBL), Q3UHC1 (UniProtKB/TrEMBL), Q8C5V7 (UniProtKB/TrEMBL) |
| - Sequence: |
MSSGLGLRRSPEMSGKIEKADSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPVhide sequence |
| RefSeq Acc Id: | XP_006497646 ⟸ XM_006497583 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MSSGLGLRRSPEMSGKIEKADSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPVhide sequence |
| RefSeq Acc Id: | XP_006497645 ⟸ XM_006497582 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_006497647 ⟸ XM_006497584 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_006497650 ⟸ XM_006497587 |
| - Peptide Label: | isoform X8 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_006497649 ⟸ XM_006497586 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_006497648 ⟸ XM_006497585 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_006497652 ⟸ XM_006497589 |
| - Peptide Label: | isoform X10 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_006497653 ⟸ XM_006497590 |
| - Peptide Label: | isoform X12 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_006497655 ⟸ XM_006497592 |
| - Peptide Label: | isoform X14 |
| - Sequence: |
MGNAVEKQKPLRQSHLCPWKQDSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPhide sequence |
| RefSeq Acc Id: | XP_030102344 ⟸ XM_030246484 |
| - Peptide Label: | isoform X11 |
| RefSeq Acc Id: | XP_030102342 ⟸ XM_030246482 |
| - Peptide Label: | isoform X7 |
| RefSeq Acc Id: | XP_030102347 ⟸ XM_030246487 |
| - Peptide Label: | isoform X15 |
| RefSeq Acc Id: | NP_001349631 ⟸ NM_001362702 |
| - Peptide Label: | isoform 4 |
| RefSeq Acc Id: | XP_030102345 ⟸ XM_030246485 |
| - Peptide Label: | isoform X13 |
| RefSeq Acc Id: | XP_030102348 ⟸ XM_030246488 |
| - Peptide Label: | isoform X16 |
| RefSeq Acc Id: | XP_030102343 ⟸ XM_030246483 |
| - Peptide Label: | isoform X9 |
| RefSeq Acc Id: | XP_030102341 ⟸ XM_030246481 |
| - Peptide Label: | isoform X5 |
Promoters| RGD ID: | 6832261 | |||||||||
| Promoter ID: | MM_KWN:28446 | |||||||||
| Type: | CpG-Island | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell | |||||||||
| Transcripts: | ENSMUST00000048301, NM_001039086, NM_001039087, OTTMUST00000028646, UC008IZT.1 | |||||||||
| Position: |
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| RGD ID: | 6832264 | |||||||||
| Promoter ID: | MM_KWN:28447 | |||||||||
| Type: | Non-CpG | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | Lung | |||||||||
| Transcripts: | OTTMUST00000028647, OTTMUST00000028648, OTTMUST00000028652, UC008IZX.1 | |||||||||
| Position: |
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| RGD ID: | 6832260 | |||||||||
| Promoter ID: | MM_KWN:28448 | |||||||||
| Type: | Non-CpG | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | Brain | |||||||||
| Transcripts: | OTTMUST00000028649 | |||||||||
| Position: |
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| RGD ID: | 6832257 | |||||||||
| Promoter ID: | MM_KWN:28449 | |||||||||
| Type: | Non-CpG | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | Brain, Lung | |||||||||
| Transcripts: | OTTMUST00000028650 | |||||||||
| Position: |
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| RGD ID: | 6832262 | |||||||||
| Promoter ID: | MM_KWN:28450 | |||||||||
| Type: | Non-CpG | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | MPROMDB | |||||||||
| Tissues & Cell Lines: | BoneMarrow_0Hour, Brain, Kidney, Lung | |||||||||
| Transcripts: | OTTMUST00000028651 | |||||||||
| Position: |
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| RGD ID: | 6876832 | |||||||||
| Promoter ID: | EPDNEW_M1867 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Rapgef1_1 | |||||||||
| Description: | Mus musculus Rap guanine nucleotide exchange factor 1 , transcriptvariant 3, mRNA. | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | MGI:104580 | AgrOrtholog |
| Ensembl Genes | ENSMUSG00000039844 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSMUSP00000088680 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSMUSP00000092703 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUSP00000099936 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUSP00000117631 | UniProtKB/TrEMBL | |
| ENSMUSP00000121615 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUSP00000158995 | ENTREZGENE | |
| Ensembl Transcript | ENSMUST00000091146 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSMUST00000095087 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUST00000102872 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUST00000147488 | UniProtKB/TrEMBL | |
| ENSMUST00000147755 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSMUST00000238899 | ENTREZGENE | |
| Gene3D-CATH | 1.10.840.10 | UniProtKB/TrEMBL |
| InterPro | Ras-like_GEF | UniProtKB/TrEMBL |
| Ras-like_Gua-exchang_fac_N | UniProtKB/TrEMBL | |
| Ras_G-nucl-exch_fac_CS | UniProtKB/TrEMBL | |
| Ras_GEF_dom | UniProtKB/TrEMBL | |
| RASGEF_cat_dom_sf | UniProtKB/TrEMBL | |
| RasGRF_CDC25 | UniProtKB/TrEMBL | |
| KEGG Report | mmu:107746 | UniProtKB/TrEMBL |
| MGD | MGI:104580 | ENTREZGENE |
| NCBI Gene | 107746 | ENTREZGENE |
| PANTHER | PTHR23113 | UniProtKB/TrEMBL |
| Pfam | RasGEF | UniProtKB/TrEMBL |
| RasGEF_N | UniProtKB/TrEMBL | |
| PhenoGen | Rapgef1 | PhenoGen |
| PROSITE | RASGEF | UniProtKB/TrEMBL |
| RASGEF_CAT | UniProtKB/TrEMBL | |
| RASGEF_NTER | UniProtKB/TrEMBL | |
| SMART | RasGEF | UniProtKB/TrEMBL |
| RasGEFN | UniProtKB/TrEMBL | |
| Superfamily-SCOP | Ras_GEF | UniProtKB/TrEMBL |
| UniGene | Mm.298274 | ENTREZGENE |
| UniProt | A1L338_MOUSE | UniProtKB/TrEMBL |
| E0CXV1_MOUSE | UniProtKB/TrEMBL | |
| F6ZDE5_MOUSE | UniProtKB/TrEMBL | |
| Q3UGX8 | ENTREZGENE, UniProtKB/TrEMBL | |
| Q3UHC1 | ENTREZGENE, UniProtKB/TrEMBL | |
| Q3V301_MOUSE | UniProtKB/TrEMBL | |
| Q3V363_MOUSE | UniProtKB/TrEMBL | |
| Q8C5V7 | ENTREZGENE, UniProtKB/TrEMBL | |
| Q8R3X5_MOUSE | UniProtKB/TrEMBL | |
| Q91ZZ2 | ENTREZGENE, UniProtKB/TrEMBL |
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| More on Rapgef1 | |
|
Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: mm9 mm10 |
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MGI Report |
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NCBI Genome Data Viewer |
| CRRD Object Information | |
| CRRD ID: | 1614994 |
| Created: | 2007-04-30 |
| Species: | Mus musculus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
