Vmn1r227 (vomeronasal 1 receptor 227) - Chinchilla Research Resource Database
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Gene: Vmn1r227 (vomeronasal 1 receptor 227) Mus musculus
Analyze
Symbol: Vmn1r227
Name: vomeronasal 1 receptor 227
CRRD ID: 1616632
Description: Predicted to have pheromone binding activity and pheromone receptor activity. Predicted to be involved in response to pheromone. Predicted to localize to integral component of plasma membrane; INTERACTS WITH acrylamide; genistein; potassium dichromate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: V1r; V1re6; vomernasal 1 receptor Vmn1r227; vomeronasal 1 receptor, E6
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391720,955,468 - 20,956,388 (+)NCBI
GRCm381720,735,206 - 20,736,126 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1720,729,843 - 20,739,150 (+)EnsemblGRCm38mm10GRCm38
MGSCv371720,872,064 - 20,873,090 (+)NCBIGRCm37mm9NCBIm37
MGSCv361720,439,797 - 20,440,823 (+)NCBImm8
Celera1721,770,194 - 21,771,219 (+)NCBICelera
Cytogenetic Map17A3.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802169   PMID:19952141   PMID:20003482   PMID:21267068  


Genomics

Position Markers
UniSTS:487648  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381720,735,100 - 20,736,126UniSTSGRCm38
MGSCv371720,872,064 - 20,873,090UniSTSGRCm37
Celera1721,770,194 - 21,771,219UniSTS
Cytogenetic Map17A3.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120924747Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120924747Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125443244Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1197944224857795Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171241779526182159Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:107
Interacting mature miRNAs:107
Transcripts:ENSMUST00000088829
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000088829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1720,729,870 - 20,739,150 (+)Ensembl
RefSeq Acc Id: ENSMUST00000179914   ⟹   ENSMUSP00000156485
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1720,729,843 - 20,739,150 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232844
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1720,729,843 - 20,739,150 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232943   ⟹   ENSMUSP00000156554
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1720,729,843 - 20,739,150 (+)Ensembl
RefSeq Acc Id: ENSMUST00000233597   ⟹   ENSMUSP00000156626
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1720,729,843 - 20,739,150 (+)Ensembl
RefSeq Acc Id: NM_134195   ⟹   NP_598956
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391720,955,468 - 20,956,388 (+)NCBI
GRCm381720,735,206 - 20,736,126 (+)NCBI
MGSCv371720,872,064 - 20,873,090 (+)RGD
Celera1721,770,194 - 21,771,219 (+)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_598956 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL47911 (Get FASTA)   NCBI Sequence Viewer  
  EDL38019 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_598956   ⟸   NM_134195
- Sequence:
RefSeq Acc Id: ENSMUSP00000156485   ⟸   ENSMUST00000179914
RefSeq Acc Id: ENSMUSP00000156626   ⟸   ENSMUST00000233597
RefSeq Acc Id: ENSMUSP00000156554   ⟸   ENSMUST00000232943
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000067951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000156485 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000156554 UniProtKB/TrEMBL
  ENSMUSP00000156626 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000179914 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000232943 UniProtKB/TrEMBL
  ENSMUST00000233597 UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
MGD MGI:2159627 ENTREZGENE
NCBI Gene 171229 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r227 PhenoGen
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
UniProt A0A3B2W3R4_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r227  vomeronasal 1 receptor 227  V1re6  vomeronasal 1 receptor, E6  Symbol and/or name change 5135510 APPROVED