Bricd5 (BRICHOS domain containing 5) - Chinchilla Research Resource Database
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Gene: Bricd5 (BRICHOS domain containing 5) Mus musculus
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Symbol: Bricd5
Name: BRICHOS domain containing 5
CRRD ID: 1617999
Description: Predicted to be involved in regulation of cell population proliferation. Predicted to localize to extracellular space. Orthologous to human BRICD5 (BRICHOS domain containing 5); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; XL147.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 9930021D14Rik; BRICHOS domain-containing protein 5; BRICHOS domain-containing protein C16orf79; hypothetical protein LOC319259; uncharacterized protein LOC319259
Orthologs:
Homo sapiens (human) : BRICD5 (BRICHOS domain containing 5)  HGNC  Alliance
Rattus norvegicus (Norway rat) : Bricd5 (BRICHOS domain containing 5)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Bricd5 (BRICHOS domain containing 5)
Pan paniscus (bonobo/pygmy chimpanzee) : BRICD5 (BRICHOS domain containing 5)
Canis lupus familiaris (dog) : BRICD5 (BRICHOS domain containing 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Bricd5 (BRICHOS domain containing 5)
Sus scrofa (pig) : BRICD5 (BRICHOS domain containing 5)
Chlorocebus sabaeus (African green monkey) : BRICD5 (BRICHOS domain containing 5)
Heterocephalus glaber (naked mole-rat) : Bricd5 (BRICHOS domain containing 5)
more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,692,858 - 24,694,443 (+)NCBI
GRCm381724,473,487 - 24,475,471 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,473,884 - 24,475,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,610,829 - 24,612,414 (+)NCBIGRCm37mm9NCBIm37
MGSCv361724,201,484 - 24,203,069 (+)NCBImm8
Celera1724,989,660 - 24,991,245 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  
PMID:30721158  


Genomics

Comparative Map Data
Bricd5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,692,858 - 24,694,443 (+)NCBI
GRCm381724,473,487 - 24,475,471 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,473,884 - 24,475,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,610,829 - 24,612,414 (+)NCBIGRCm37mm9NCBIm37
MGSCv361724,201,484 - 24,203,069 (+)NCBImm8
Celera1724,989,660 - 24,991,245 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
BRICD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl162,209,253 - 2,211,950 (-)EnsemblGRCh38hg38GRCh38
GRCh38162,209,253 - 2,210,863 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37162,259,254 - 2,263,541 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,199,255 - 2,201,012 (-)NCBINCBI36hg18NCBI36
Celera162,473,671 - 2,475,428 (-)NCBI
Cytogenetic Map16p13.3NCBI
HuRef162,185,432 - 2,187,247 (-)NCBIHuRef
CHM1_1162,259,180 - 2,260,995 (-)NCBICHM1_1
Bricd5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01013,839,599 - 13,841,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,839,956 - 13,841,018 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,656,585 - 13,658,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,725,912 - 13,727,392 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1013,179,206 - 13,180,739 (+)NCBICelera
Cytogenetic Map10q12NCBI
Bricd5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,055,513 - 15,060,526 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,054,116 - 15,056,506 (+)NCBIChiLan1.0ChiLan1.0
BRICD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1162,310,660 - 2,312,995 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,310,660 - 2,312,995 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0161,067,543 - 1,069,836 (-)NCBIMhudiblu_PPA_v0panPan3
BRICD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl638,758,254 - 38,761,735 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1638,760,164 - 38,761,718 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Bricd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366941,836,566 - 1,838,950 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRICD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,780,940 - 39,782,466 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,780,707 - 39,782,478 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,398,543 - 42,400,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BRICD5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl52,105,235 - 2,106,695 (-)Ensembl
ChlSab1.152,105,125 - 2,107,353 (-)NCBI
Bricd5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462491348,445 - 50,752 (+)NCBI

Position Markers
RH127723  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,472,792 - 24,473,077UniSTSGRCm38
MGSCv371724,609,737 - 24,610,022UniSTSGRCm37
Celera1724,988,568 - 24,988,853UniSTS
Cytogenetic Map17A3.3UniSTS
AI505104  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,475,619 - 24,475,715UniSTSGRCm38
MGSCv371724,612,564 - 24,612,660UniSTSGRCm37
Celera1724,991,395 - 24,991,491UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17310.79UniSTS
AA409454  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,473,672 - 24,473,819UniSTSGRCm38
MGSCv371724,610,617 - 24,610,764UniSTSGRCm37
Celera1724,989,448 - 24,989,595UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17310.53UniSTS
Whitehead/MRC_RH17310.02UniSTS
RH124862  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,473,639 - 24,473,728UniSTSGRCm38
MGSCv371724,610,584 - 24,610,673UniSTSGRCm37
Celera1724,989,415 - 24,989,504UniSTS
Cytogenetic Map17A3.3UniSTS
RH125846  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,473,609 - 24,473,858UniSTSGRCm38
MGSCv371724,610,554 - 24,610,803UniSTSGRCm37
Celera1724,989,385 - 24,989,634UniSTS
Cytogenetic Map17A3.3UniSTS
UniSTS:492327  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,473,967 - 24,475,387UniSTSGRCm38
MGSCv371724,610,912 - 24,612,332UniSTSGRCm37
Celera1724,989,743 - 24,991,163UniSTS
Cytogenetic Map17A3.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125443244Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1197944224857795Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171241779526182159Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172268105525502498Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172430185958301973Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:406
Count of miRNA genes:273
Interacting mature miRNAs:302
Transcripts:ENSMUST00000054946, ENSMUST00000164508
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000054946   ⟹   ENSMUSP00000059792
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1724,473,884 - 24,475,469 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164508   ⟹   ENSMUSP00000130417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1724,473,967 - 24,475,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238986   ⟹   ENSMUSP00000159026
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1724,473,901 - 24,475,469 (+)Ensembl
RefSeq Acc Id: NM_175682   ⟹   NP_783613
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,692,858 - 24,694,443 (+)NCBI
GRCm381724,473,884 - 24,475,469 (+)NCBI
MGSCv371724,610,829 - 24,612,414 (+)RGD
Celera1724,989,660 - 24,991,245 (+)RGD
cM Map17 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_783613   ⟸   NM_175682
- UniProtKB: Q8BV89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000130417   ⟸   ENSMUST00000164508
RefSeq Acc Id: ENSMUSP00000059792   ⟸   ENSMUST00000054946
RefSeq Acc Id: ENSMUSP00000159026   ⟸   ENSMUST00000238986
Protein Domains
BRICHOS

Promoters
RGD ID:13675024
Promoter ID:EPDNEW_M21662
Type:multiple initiation site
Name:Bricd5_1
Description:Mus musculus BRICHOS domain containing 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381724,473,911 - 24,473,971EPDNEW
RGD ID:6827724
Promoter ID:MM_KWN:22519
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_175682,   UC008AWL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361724,609,891 - 24,611,327 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441766 AgrOrtholog
Ensembl Genes ENSMUSG00000045744 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000059792 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000130417 UniProtKB/TrEMBL
  ENSMUSP00000159026 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000054946 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000164508 UniProtKB/TrEMBL
  ENSMUST00000238986 UniProtKB/TrEMBL
InterPro BRICHOS_dom UniProtKB/TrEMBL
KEGG Report mmu:319259 UniProtKB/TrEMBL
MGD MGI:2441766 ENTREZGENE
NCBI Gene 319259 ENTREZGENE
Pfam BRICHOS UniProtKB/TrEMBL
PhenoGen Bricd5 PhenoGen
PROSITE BRICHOS UniProtKB/TrEMBL
SMART BRICHOS UniProtKB/TrEMBL
UniGene Mm.258355 ENTREZGENE
  Mm.289516 ENTREZGENE
UniProt A0A5F8MPL8_MOUSE UniProtKB/TrEMBL
  Q4VAG0_MOUSE UniProtKB/TrEMBL
  Q8BV89 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F6RA38 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-06 Bricd5  BRICHOS domain containing 5  9930021D14Rik  RIKEN cDNA 9930021D14 gene  Symbol and/or name change 5135510 APPROVED