Zfp229 (zinc finger protein 229) - Chinchilla Research Resource Database
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Gene: Zfp229 (zinc finger protein 229) Mus musculus
Analyze
Symbol: Zfp229
Name: zinc finger protein 229
CRRD ID: 1622809
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus; INTERACTS WITH 1,2-dimethylhydrazine; dichloromethane; phenobarbital.
Type: protein-coding
RefSeq Status: VALIDATED
Orthologs:
No known orthologs. homologs ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391721,949,936 - 21,967,950 (+)NCBI
GRCm381721,730,955 - 21,748,969 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1721,730,795 - 21,769,342 (+)EnsemblGRCm38mm10GRCm38
MGSCv371721,870,691 - 21,885,936 (+)NCBIGRCm37mm9NCBIm37
MGSCv361721,434,954 - 21,474,042 (+)NCBImm8
MGSCv361720,790,016 - 20,829,248 (+)NCBImm8
Celera7146,407,925 - 146,423,169 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
1. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15618518   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:21873635  


Genomics

Position Markers
Zfp52  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381721,747,928 - 21,748,049UniSTSGRCm38
MGSCv371721,884,895 - 21,885,016UniSTSGRCm37
Celera7146,422,128 - 146,422,249UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map17A3.2UniSTS
cM Map179.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125443244Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17836594042366175Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17836594042366175Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined17986241186688972Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171065914544659245Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1098759739053168Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1166699745667145Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171177921045779210Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1197944224857795Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171206732483054339Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171223281346232813Mouse
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171241779526182159Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171242798746427987Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171390439847904522Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171484267848842786Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171484267848842786Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171484267848842786Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171484267848842786Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171660074750600869Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171660074750600869Mouse
1301505Tir1_mtrypanosome infection response 1 (mouse)Not determined171660074750600869Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171661519333600869Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171681096950811104Mouse
1302042Acsns3_mAngiostrongylus costaricensis nematode susceptibility 3 (mouse)Not determined171724323451243371Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171724323451243371Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171724323451243371Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171724323451243371Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171724323451243371Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171795643651959238Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171819938152202007Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171820316552205351Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171883413352834133Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1335
Count of miRNA genes:642
Interacting mature miRNAs:757
Transcripts:ENSMUST00000065871, ENSMUST00000182334, ENSMUST00000182603, ENSMUST00000182827, ENSMUST00000182923, ENSMUST00000183192
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000065871   ⟹   ENSMUSP00000065379
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1721,733,724 - 21,748,968 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182334
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1721,733,680 - 21,736,081 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182603   ⟹   ENSMUSP00000138107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1721,735,912 - 21,748,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182827   ⟹   ENSMUSP00000138478
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1721,730,795 - 21,745,061 (+)Ensembl
RefSeq Acc Id: ENSMUST00000182923
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1721,733,713 - 21,734,917 (+)Ensembl
RefSeq Acc Id: ENSMUST00000183192   ⟹   ENSMUSP00000138265
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1721,733,724 - 21,769,342 (+)Ensembl
RefSeq Acc Id: NM_001164676   ⟹   NP_001158148
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391721,952,705 - 21,967,950 (+)NCBI
GRCm381721,733,724 - 21,748,969 (+)ENTREZGENE
MGSCv371721,870,691 - 21,885,936 (+)RGD
Celera7146,407,925 - 146,423,169 (+)NCBI
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030249860   ⟹   XP_030105720
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391721,951,202 - 21,967,950 (+)NCBI
GRCm381721,732,289 - 21,748,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249861   ⟹   XP_030105721
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391721,951,202 - 21,967,950 (+)NCBI
GRCm381721,732,289 - 21,748,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249862   ⟹   XP_030105722
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391721,949,991 - 21,967,950 (+)NCBI
GRCm381721,731,010 - 21,748,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249863   ⟹   XP_030105723
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391721,950,012 - 21,967,950 (+)NCBI
GRCm381721,731,029 - 21,748,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249864   ⟹   XP_030105724
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391721,949,936 - 21,967,950 (+)NCBI
GRCm381721,730,955 - 21,748,969 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001158148   ⟸   NM_001164676
- UniProtKB: E9PWT2 (UniProtKB/TrEMBL),   Q80ZY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030105724   ⟸   XM_030249864
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105722   ⟸   XM_030249862
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105723   ⟸   XM_030249863
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105721   ⟸   XM_030249861
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030105720   ⟸   XM_030249860
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000065379   ⟸   ENSMUST00000065871
RefSeq Acc Id: ENSMUSP00000138265   ⟸   ENSMUST00000183192
RefSeq Acc Id: ENSMUSP00000138107   ⟸   ENSMUST00000182603
RefSeq Acc Id: ENSMUSP00000138478   ⟸   ENSMUST00000182827
Protein Domains
C2H2-type   KRAB

Promoters
RGD ID:13674896
Promoter ID:EPDNEW_M21597
Type:initiation region
Name:Zfp229_1
Description:Mus musculus zinc finger protein 229 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381721,733,743 - 21,733,803EPDNEW
RGD ID:6827870
Promoter ID:MM_KWN:22368
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:UC008ARG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361721,863,911 - 21,864,411 (+)MPROMDB
RGD ID:6827873
Promoter ID:MM_KWN:22369
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001164676,   UC008ARH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361721,870,569 - 21,871,069 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2679295 AgrOrtholog
Ensembl Genes ENSMUSG00000061544 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000065379 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000138107 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000138265 UniProtKB/TrEMBL
  ENSMUSP00000138478 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000065871 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000182603 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000182827 UniProtKB/TrEMBL
  ENSMUST00000183192 UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:381067 UniProtKB/TrEMBL
MGD MGI:2679295 ENTREZGENE
NCBI Gene 381067 ENTREZGENE
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp229 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniGene Mm.482723 ENTREZGENE
UniProt E9PWT2 ENTREZGENE, UniProtKB/TrEMBL
  Q80ZY7 ENTREZGENE, UniProtKB/TrEMBL
  S4R1L0_MOUSE UniProtKB/TrEMBL
  S4R233_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-15 Zfp229  zinc finger protein 229  Zfp229  zinc finger protein  Symbol and/or name change 5135510 APPROVED