B4GALT1 (beta-1,4-galactosyltransferase 1) - Chinchilla Research Resource Database
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Gene: B4GALT1 (beta-1,4-galactosyltransferase 1) Chlorocebus sabaeus
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Symbol: B4GALT1
Name: beta-1,4-galactosyltransferase 1
CRRD ID: 18505219
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (ortholog); beta-tubulin binding (ortholog); INVOLVED IN acute inflammatory response (ortholog); angiogenesis involved in wound healing (ortholog); binding of sperm to zona pellucida (ortholog); PARTICIPATES IN galactose metabolic pathway; galactosemia pathway; Glut1 deficiency syndrome pathway; ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IId (ortholog); FOUND IN basolateral plasma membrane (ortholog); brush border membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Homo sapiens (human) : B4GALT1 (beta-1,4-galactosyltransferase 1)  HGNC  Alliance
Mus musculus (house mouse) : B4galt1 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : B4galt1 (beta-1,4-galactosyltransferase 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : B4galt1 (beta-1,4-galactosyltransferase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : B4GALT1 (beta-1,4-galactosyltransferase 1)
Canis lupus familiaris (dog) : B4GALT1 (beta-1,4-galactosyltransferase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : B4galt1 (beta-1,4-galactosyltransferase 1)
Sus scrofa (pig) : B4GALT1 (beta-1,4-galactosyltransferase 1)
Heterocephalus glaber (naked mole-rat) : B4galt1 (beta-1,4-galactosyltransferase 1)
more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1247,104,789 - 47,162,173 (+)Ensembl
ChlSab1.11247,104,750 - 47,162,157 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View


Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
B4GALT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1247,104,789 - 47,162,173 (+)Ensembl
ChlSab1.11247,104,750 - 47,162,157 (+)NCBI
B4GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl933,104,082 - 33,167,356 (-)EnsemblGRCh38hg38GRCh38
GRCh38933,104,077 - 33,167,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37933,110,636 - 33,167,356 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,100,642 - 33,157,236 (-)NCBINCBI36hg18NCBI36
Build 34933,100,641 - 33,157,231NCBI
Celera933,041,647 - 33,098,362 (-)NCBI
Cytogenetic Map9p21.1NCBI
HuRef933,068,632 - 33,125,120 (-)NCBIHuRef
CHM1_1933,110,422 - 33,167,124 (-)NCBICHM1_1
B4galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,804,602 - 40,855,711 (-)NCBI
GRCm38440,804,602 - 40,853,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,804,602 - 40,854,005 (-)EnsemblGRCm38mm10GRCm38
MGSCv37440,751,635 - 40,801,031 (-)NCBIGRCm37mm9NCBIm37
MGSCv36440,993,273 - 41,042,669 (-)NCBImm8
Celera440,465,334 - 40,514,995 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.46NCBI
B4galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0557,121,768 - 57,168,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,121,769 - 57,168,610 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0561,653,278 - 61,700,179 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,196,388 - 58,243,231 (-)NCBIRGSC3.4rn4RGSC3.4
Celera554,547,735 - 54,594,543 (-)NCBICelera
Cytogenetic Map5q22NCBI
B4galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,490,661 - 2,536,317 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,490,649 - 2,536,053 (+)NCBIChiLan1.0ChiLan1.0
B4GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1933,697,551 - 33,754,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,691,733 - 33,754,192 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0932,889,124 - 32,945,759 (-)NCBI
B4GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1150,226,242 - 50,276,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11150,223,880 - 50,276,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
B4galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365241,659,791 - 1,713,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,317,305 - 33,381,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,317,295 - 33,381,285 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,574,201 - 37,635,284 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4galt1
(Heterocephalus glaber - naked mole-rat)
No map positions available.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 3 20
Low 17 40
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000007982   ⟹   ENSCSAP00000006139
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1247,104,789 - 47,162,173 (+)Ensembl
RefSeq Acc Id: XM_007969006   ⟹   XP_007967197
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.11247,104,802 - 47,162,156 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007969007   ⟹   XP_007967198
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.11247,104,750 - 47,162,157 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007967197 (Get FASTA)   NCBI Sequence Viewer  
  XP_007967198 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_007967198   ⟸   XM_007969007
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RC00 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007967197   ⟸   XM_007969006
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000006139   ⟸   ENSCSAT00000007982


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009902 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCSAP00000006139 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007982 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4GALT1 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0D9RC00 ENTREZGENE, UniProtKB/TrEMBL

 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.