SUPT20H (SPT20 homolog, SAGA complex component) - Chinchilla Research Resource Database
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Gene: SUPT20H (SPT20 homolog, SAGA complex component) Chlorocebus sabaeus
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Symbol: SUPT20H
Name: SPT20 homolog, SAGA complex component
CRRD ID: 18637252
Description: INVOLVED IN positive regulation of gluconeogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN SAGA-type complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: transcription factor SPT20 homolog
Orthologs:
Homo sapiens (human) : SUPT20H (SPT20 homolog, SAGA complex component)  HGNC  Alliance
Mus musculus (house mouse) : Supt20 (SPT20 SAGA complex component)  MGI  Alliance
Rattus norvegicus (Norway rat) : Supt20h (SPT20 homolog, SAGA complex component)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Supt20h (SPT20 homolog, SAGA complex component)
Pan paniscus (bonobo/pygmy chimpanzee) : SUPT20H (SPT20 homolog, SAGA complex component)
Canis lupus familiaris (dog) : SUPT20H (SPT20 homolog, SAGA complex component)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Supt20h (SPT20 homolog, SAGA complex component)
Sus scrofa (pig) : SUPT20H (SPT20 homolog, SAGA complex component)
Heterocephalus glaber (naked mole-rat) : Supt20h (SPT20 homolog, SAGA complex component)
more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl315,529,378 - 15,578,293 (-)Ensembl
ChlSab1.1315,529,023 - 15,578,330 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SUPT20H
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl315,529,378 - 15,578,293 (-)Ensembl
ChlSab1.1315,529,023 - 15,578,330 (-)NCBI
SUPT20H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1337,009,312 - 37,059,713 (-)EnsemblGRCh38hg38GRCh38
GRCh381337,009,312 - 37,059,714 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371337,583,449 - 37,633,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361336,481,449 - 36,531,850 (-)NCBINCBI36hg18NCBI36
Build 341336,481,630 - 36,531,787NCBI
Celera1318,650,692 - 18,701,096 (-)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1318,394,967 - 18,445,535 (-)NCBIHuRef
CHM1_11337,550,999 - 37,601,397 (-)NCBICHM1_1
Supt20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,600,181 - 54,636,184 (+)NCBI
GRCm38354,692,760 - 54,728,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl354,692,807 - 54,728,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv37354,497,027 - 54,520,759 (+)NCBIGRCm37mm9NCBIm37
MGSCv36354,781,034 - 54,804,766 (+)NCBImm8
Celera354,414,785 - 54,438,517 (+)NCBICelera
Cytogenetic Map3CNCBI
Supt20h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02143,892,609 - 143,925,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2143,892,567 - 143,925,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02160,337,768 - 160,370,787 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,921,831 - 143,955,032 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12143,871,793 - 143,904,995 (+)NCBI
Celera2133,382,206 - 133,415,296 (+)NCBICelera
Cytogenetic Map2q26NCBI
Supt20h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554319,014,726 - 9,050,844 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554319,013,325 - 9,050,844 (+)NCBIChiLan1.0ChiLan1.0
SUPT20H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11336,647,184 - 36,698,654 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,647,544 - 36,687,513 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01318,217,142 - 18,268,937 (-)NCBI
SUPT20H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl253,658,795 - 3,701,763 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1253,658,528 - 3,698,487 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Supt20h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647231,119,671 - 31,129,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT20H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,825,760 - 12,864,929 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,825,758 - 12,864,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,814,393 - 12,827,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Supt20h
(Heterocephalus glaber - naked mole-rat)
No map positions available.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 16 60
Low 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007960153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007960170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AQIB01113704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000015960   ⟹   ENSCSAP00000013885
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl315,529,378 - 15,578,293 (-)Ensembl
RefSeq Acc Id: XM_007960153   ⟹   XP_007958344
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960154   ⟹   XP_007958345
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960155   ⟹   XP_007958346
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960156   ⟹   XP_007958347
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,575,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960157   ⟹   XP_007958348
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,118 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960158   ⟹   XP_007958349
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960159   ⟹   XP_007958350
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960160   ⟹   XP_007958351
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960161   ⟹   XP_007958352
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960162   ⟹   XP_007958353
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960163   ⟹   XP_007958354
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,023 - 15,578,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960164   ⟹   XP_007958355
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960165   ⟹   XP_007958356
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,023 - 15,578,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960166   ⟹   XP_007958357
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,023 - 15,578,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960167   ⟹   XP_007958358
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,023 - 15,578,103 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960168   ⟹   XP_007958359
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,023 - 15,578,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960169   ⟹   XP_007958360
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,529,198 - 15,578,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960170   ⟹   XP_007958361
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1315,537,044 - 15,578,181 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_007958356   ⟸   XM_007960165
- Peptide Label: isoform X9
- UniProtKB: A0A0D9RZ46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007958354   ⟸   XM_007960163
- Peptide Label: isoform X7
RefSeq Acc Id: XP_007958357   ⟸   XM_007960166
- Peptide Label: isoform X10
RefSeq Acc Id: XP_007958359   ⟸   XM_007960168
- Peptide Label: isoform X10
RefSeq Acc Id: XP_007958358   ⟸   XM_007960167
- Peptide Label: isoform X10
RefSeq Acc Id: XP_007958350   ⟸   XM_007960159
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007958360   ⟸   XM_007960169
- Peptide Label: isoform X11
RefSeq Acc Id: XP_007958349   ⟸   XM_007960158
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007958355   ⟸   XM_007960164
- Peptide Label: isoform X8
RefSeq Acc Id: XP_007958352   ⟸   XM_007960161
- Peptide Label: isoform X5
RefSeq Acc Id: XP_007958351   ⟸   XM_007960160
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007958353   ⟸   XM_007960162
- Peptide Label: isoform X6
RefSeq Acc Id: XP_007958344   ⟸   XM_007960153
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007958346   ⟸   XM_007960155
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007958348   ⟸   XM_007960157
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007958345   ⟸   XM_007960154
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007958347   ⟸   XM_007960156
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007958361   ⟸   XM_007960170
- Peptide Label: isoform X12
RefSeq Acc Id: ENSCSAP00000013885   ⟸   ENSCSAT00000015960


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017865 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCSAP00000013885 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015960 ENTREZGENE, UniProtKB/TrEMBL
InterPro Spt20 UniProtKB/TrEMBL
NCBI Gene SUPT20H ENTREZGENE
PANTHER PTHR13526 UniProtKB/TrEMBL
Pfam Spt20 UniProtKB/TrEMBL
UniProt A0A0D9RZ46 ENTREZGENE, UniProtKB/TrEMBL

 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.