Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Bcat1 (branched chain amino acid transaminase 1) Rattus norvegicus
Analyze
Symbol: Bcat1
Name: branched chain amino acid transaminase 1
Description: Exhibits branched-chain-amino-acid transaminase activity and identical protein binding activity. Predicted to be involved in branched-chain amino acid catabolic process; leucine biosynthetic process; and valine biosynthetic process. Localizes to the cytoplasm. Orthologous to human BCAT1 (branched chain amino acid transaminase 1); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; INTERACTS WITH 17alpha-ethynylestradiol; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: BCAT(c); Bcatc; branched chain amino acid transaminase 1, cytosolic; branched chain aminotransferase 1, cytosolic; branched-chain-amino-acid aminotransferase, cytosolic; MGC105472
Orthologs:
Homo sapiens (human) : BCAT1 (branched chain amino acid transaminase 1)  HGNC  Alliance
Mus musculus (house mouse) : Bcat1 (branched chain aminotransferase 1, cytosolic)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Bcat1 (branched chain amino acid transaminase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : BCAT1 (branched chain amino acid transaminase 1)
Canis lupus familiaris (dog) : BCAT1 (branched chain amino acid transaminase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Bcat1 (branched chain amino acid transaminase 1)
Sus scrofa (pig) : BCAT1 (branched chain amino acid transaminase 1)
more info ...
Allele / Splice: Bcat1em2Mcwi  
Genetic Models: SS-Bcat1em2Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04179,259,305 - 179,340,021 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4179,259,308 - 179,339,795 (-)Ensembl
Rnor_5.04243,444,839 - 243,460,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04243,463,299 - 243,491,574 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44182,641,517 - 182,692,917 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14182,886,640 - 182,938,041 (-)NCBI
Celera4166,483,269 - 166,533,125 (-)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Bcat1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2195
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.