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Gene: H3f3a (H3 histone family member 3A) Rattus norvegicus
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Symbol: H3f3a
Name: H3 histone family member 3A
CRRD ID: 2319910
Description: Predicted to have RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Predicted to be involved in several processes, including chromatin assembly; gamete generation; and negative regulation of chromosome condensation. Predicted to localize to Barr body; nuclear chromosome, telomeric region; and nuclear nucleosome. Orthologous to several human genes including H3-3B (H3.3 histone B); PARTICIPATES IN histone modification pathway; INTERACTS WITH ammonium chloride; 1,2-dimethylhydrazine (ortholog); 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: H3 histone, family 3A; histone H3.3; histone H3.3B-like; LOC100361558
Orthologs:
Homo sapiens (human) : H3-3A (H3.3 histone A)  HGNC  Alliance
Mus musculus (house mouse) : H3f3a (H3.3 histone A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : H3f3a (H3 histone, family 3A)
Pan paniscus (bonobo/pygmy chimpanzee) : LOC100970414 (histone H3.3A)
Canis lupus familiaris (dog) : H3-3A (H3.3 histone A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : LOC101963041 (histone H3.3)
Sus scrofa (pig) : H3-3A (H3 histone, family 3A)
Chlorocebus sabaeus (African green monkey) : H3F3A (H3 histone, family 3A)
Heterocephalus glaber (naked mole-rat) : LOC101699418 (histone H3.3)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01399,091,246 - 99,102,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,091,763 - 99,101,208 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,089,831 - 104,101,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,539,599 - 96,551,198 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1392,078,421 - 92,090,028 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on H3f3a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2319910
Created: 2010-05-05
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.