 Gene Ontology Annotations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
Molecular Pathway Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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Cellular Component
Molecular Function
Molecular Pathway AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway AnnotationsReferences - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 3. | RGD automated import pipeline for gene-chemical interactions |
Genomics
Position Markers| RH141566 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| hemolymphoid system | respiratory system | |
| High | ||
| Medium | ||
| Low | ||
| Below cutoff | 2 | 2 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_002728257 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_017604914 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07018028 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01083116 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000032601 ⟹ ENSRNOP00000029828 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000041430 ⟹ ENSRNOP00000040429 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000059660 ⟹ ENSRNOP00000056412 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000083961 ⟹ ENSRNOP00000075556 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_002728257 ⟹ XP_002728303 | ||||||||||||||||
| RefSeq Status: | |||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Sequence: |
ATGTGATGAAGCATTATAAAAGCAGAGAGGGGTTCCAAGGCCACAGAGCTCACTCTGCCTTCTThide sequence |
| RefSeq Acc Id: | XM_017604914 ⟹ XP_017460403 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
AAGCATTATAAAAGCAGAGAGGGGTTCCAAGGCCACAGAGCTCACTCTGCCTTCTTCCTTTCCThide sequence |
Protein Sequences| Protein RefSeqs | XP_002728303 | (Get FASTA) | NCBI Sequence Viewer |
| XP_017460403 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_002728303 ⟸ XM_002728257 |
| - UniProtKB: | P18291 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MKLLLLLLSFSLAPKTEAGEIIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAhide sequence |
| RefSeq Acc Id: | XP_017460403 ⟸ XM_017604914 |
| - UniProtKB: | P18291 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MKLLLLLLSFSLAPKTEAGEIIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAhide sequence |
| RefSeq Acc Id: | ENSRNOP00000056412 ⟸ ENSRNOT00000059660 |
| RefSeq Acc Id: | ENSRNOP00000040429 ⟸ ENSRNOT00000041430 |
| RefSeq Acc Id: | ENSRNOP00000029828 ⟸ ENSRNOT00000032601 |
| RefSeq Acc Id: | ENSRNOP00000075556 ⟸ ENSRNOT00000083961 |
Protein Domains
Peptidase S1
TranscriptomePromoters| RGD ID: | 13699712 | ||||||||
| Promoter ID: | EPDNEW_R10234 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Gzmbl2_1 | ||||||||
| Description: | Granzyme B-like 2 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:2320097 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000045973 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| ENSRNOG00000049976 | Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Ensembl Protein | ENSRNOP00000029828 | UniProtKB/TrEMBL |
| ENSRNOP00000040429 | UniProtKB/Swiss-Prot | |
| ENSRNOP00000056412 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| ENSRNOP00000075556 | UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000032601 | UniProtKB/TrEMBL |
| ENSRNOT00000041430 | UniProtKB/Swiss-Prot | |
| ENSRNOT00000059660 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| ENSRNOT00000083961 | UniProtKB/TrEMBL | |
| Gene3D-CATH | 2.40.10.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| InterPro | Peptidase_S1_PA | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| Peptidase_S1_PA_chymotrypsin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Peptidase_S1A | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Trypsin_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| TRYPSIN_HIS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| TRYPSIN_SER | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| KEGG Report | rno:100361468 | UniProtKB/Swiss-Prot |
| rno:171528 | UniProtKB/Swiss-Prot | |
| NCBI Gene | 100361468 | ENTREZGENE |
| Pfam | Trypsin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| PhenoGen | Gzmbl2 | PhenoGen |
| PRINTS | CHYMOTRYPSIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| PROSITE | TRYPSIN_DOM | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| TRYPSIN_HIS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| TRYPSIN_SER | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| SMART | Tryp_SPc | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| Superfamily-SCOP | SSF50494 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| UniProt | A1L119_RAT | UniProtKB/TrEMBL |
| F1M7H8_RAT | UniProtKB/TrEMBL | |
| GRAB_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2012-08-22 | Gzmbl2 | Granzyme B-like 2 | LOC100361468 | Granzyme-like protein 1-like | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2010-05-05 | LOC100361468 | Granzyme-like protein 1-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Gzmbl2 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| CRRD Object Information | |
| CRRD ID: | 2320097 |
| Created: | 2010-05-05 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-09-09 |
| Status: | ACTIVE |
