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Gene: Snrpa1 (small nuclear ribonucleoprotein polypeptide A') Rattus norvegicus
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Symbol: Snrpa1
Name: small nuclear ribonucleoprotein polypeptide A'
Description: Predicted to have U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and spermatogenesis. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA1 (small nuclear ribonucleoprotein polypeptide A'); PARTICIPATES IN spliceosome pathway; INTERACTS WITH (+)-schisandrin B; atrazine; tetrachloromethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC100361269; LOC292997; U2 small nuclear ribonucleoprotein A'; U2 small nuclear ribonucleoprotein polypeptide A'
Orthologs:
Homo sapiens (human) : SNRPA1 (small nuclear ribonucleoprotein polypeptide A')  HGNC  Alliance
Mus musculus (house mouse) : Snrpa1 (small nuclear ribonucleoprotein polypeptide A')  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Snrpa1 (small nuclear ribonucleoprotein polypeptide A')
Pan paniscus (bonobo/pygmy chimpanzee) : SNRPA1 (small nuclear ribonucleoprotein polypeptide A')
Canis lupus familiaris (dog) : SNRPA1 (small nuclear ribonucleoprotein polypeptide A')
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Snrpa1 (small nuclear ribonucleoprotein polypeptide A')
Sus scrofa (pig) : SNRPA1 (small nuclear ribonucleoprotein polypeptide A')
Chlorocebus sabaeus (African green monkey) : SNRPA1 (small nuclear ribonucleoprotein polypeptide A')
Heterocephalus glaber (naked mole-rat) : Snrpa1 (small nuclear ribonucleoprotein polypeptide A')
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01126,961,389 - 126,974,453 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1126,961,389 - 126,974,453 (+)Ensembl
Rnor_5.01128,047,739 - 128,060,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,490,921 - 120,503,974 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11120,569,256 - 120,582,317 (+)NCBI
Celera1111,853,245 - 111,866,309 (+)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Snrpa1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2320494
Created: 2010-05-05
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.