Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Smpd5 (sphingomyelin phosphodiesterase 5) Rattus norvegicus
Analyze
Symbol: Smpd5
Name: sphingomyelin phosphodiesterase 5
Description: Predicted to have sphingomyelin phosphodiesterase activity. Predicted to be involved in ceramide metabolic process and sphingomyelin metabolic process. Predicted to localize to the mitochondrion. Orthologous to human SMPD5 (sphingomyelin phosphodiesterase 5, pseudogene); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; dichloroacetic acid (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC100359829; RGD1565316 protein-like
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07117,351,694 - 117,354,241 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7117,351,648 - 117,354,084 (+)Ensembl
Rnor_5.07117,337,465 - 117,340,002 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47114,323,149 - 114,327,026 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7104,361,922 - 104,364,461 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Smpd5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2323312
Created: 2010-05-06
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.