Gene: Prdm16 (PR/SET domain 16) Rattus norvegicus
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Symbol: Prdm16
Name: PR/SET domain 16
Description: Predicted to have several functions, including SMAD binding activity, activating transcription factor binding activity, and sequence-specific DNA binding activity; predicted to be involved in several processes, including brown fat cell differentiation, negative regulation of granulocyte differentiation, and regulation of cellular biosynthetic process; predicted to localize to several cellular components, including the aggresome, cytosol, and nucleoplasm; orthologous to human PRDM16 (PR/SET domain 16); PARTICIPATES IN histone modification pathway; INTERACTS WITH 1,1-dichloroethene (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 2,4-dinitrophenol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100366024; PR domain 16; PR domain containing 16; PR domain containing 16-like; PR domain zinc finger protein 16
Orthologs:
Homo sapiens (human) : PRDM16 (PR/SET domain 16)  HGNC  Alliance
Mus musculus (house mouse) : Prdm16 (PR domain containing 16)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prdm16 (PR/SET domain 16)
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM16 (PR/SET domain 16)
Canis lupus familiaris (dog) : PRDM16 (PR/SET domain 16)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm16 (PR/SET domain 16)
Sus scrofa (pig) : PRDM16 (PR/SET domain 16)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05171,662,277 - 171,711,561 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05175,133,484 - 175,180,206 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5163,089,927 - 163,303,567 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prdm16
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2324431
Created: 2010-05-06
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.