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Gene: Clcn1 (chloride voltage-gated channel 1) Rattus norvegicus
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Symbol: Clcn1
Name: chloride voltage-gated channel 1
Description: Exhibits voltage-gated chloride channel activity. Involved in chloride transport. Predicted to localize to the integral component of plasma membrane and sarcolemma. Human ortholog(s) of this gene implicated in myotonia congenita. Orthologous to human CLCN1 (chloride voltage-gated channel 1); INTERACTS WITH ammonium chloride; atorvastatin calcium; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: chloride channel 1; chloride channel 1 (skeletal muscle); chloride channel 1, skeletal muscle; chloride channel protein 1; chloride channel protein, skeletal muscle; chloride channel, voltage-sensitive 1; clC-1; SMCC
Orthologs:
Homo sapiens (human) : CLCN1 (chloride voltage-gated channel 1)  HGNC  Alliance
Mus musculus (house mouse) : Clcn1 (chloride channel, voltage-sensitive 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clcn1 (chloride voltage-gated channel 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLCN1 (chloride voltage-gated channel 1)
Canis lupus familiaris (dog) : CLCN1 (chloride voltage-gated channel 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clcn1 (chloride voltage-gated channel 1)
Sus scrofa (pig) : CLCN1 (chloride voltage-gated channel 1)
more info ...
Is Marker For: Strains:   WF.BBDR-(Clcn1-D4Rat228)/Wor  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0471,674,218 - 71,704,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04136,479,719 - 136,509,472 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,052,319 - 70,081,449 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1470,328,448 - 70,357,579 (+)NCBI
Celera466,103,038 - 66,130,477 (+)NCBICelera
Cytogenetic Map4q24NCBI
RH 3.4 Map4433.61RGD
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Candidate Gene Status
Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Clcn1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2360
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.