Gene: Col10a1 (collagen type X alpha 1 chain) Rattus norvegicus
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Symbol: Col10a1
Name: collagen type X alpha 1 chain
Description: Involved in cartilage development and endochondral ossification; localizes to the collagen-containing extracellular matrix; biomarker of degenerative disc disease; orthologous to human COL10A1 (collagen type X alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 3,3',5-triiodo-L-thyronine; 4-phenylbutyric acid; 6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(X) chain; Collagen type X alpha 1; collagen, type X, alpha 1; LOW QUALITY PROTEIN: collagen alpha-1(X) chain; procollagen, type X, alpha 1
Orthologs:
Homo sapiens (human) : COL10A1 (collagen type X alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col10a1 (collagen, type X, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col10a1 (collagen type X alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL10A1 (collagen type X alpha 1 chain)
Canis lupus familiaris (dog) : COL10A1 (collagen type X alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col10a1 (collagen type X alpha 1 chain)
Sus scrofa (pig) : COL10A1 (collagen type X alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02041,180,295 - 41,190,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02042,909,408 - 42,919,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42038,725,164 - 38,731,513 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12038,752,633 - 38,754,523 (+)NCBI
Celera2038,959,927 - 38,970,291 (+)NCBICelera
Cytogenetic Map20q12NCBI
RH 3.4 Map20408.35RGD
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col10a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2371
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.