Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Efnb1 (ephrin B1) Rattus norvegicus
Analyze
Symbol: Efnb1
Name: ephrin B1
Description: Predicted to have ephrin receptor binding activity. Involved in presynapse assembly. Localizes to the glutamatergic synapse and integral component of presynaptic membrane. Human ortholog(s) of this gene implicated in craniofrontonasal syndrome and dysostosis. Orthologous to human EFNB1 (ephrin B1); PARTICIPATES IN altered ephrin - ephrin receptor bidirectional signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: EFL-3; ELK ligand; ELK-L; EPH-related receptor tyrosine kinase ligand 2; ephrin-B1; LERK-2; LERK2
Orthologs:
Homo sapiens (human) : EFNB1 (ephrin B1)  HGNC  Alliance
Mus musculus (house mouse) : Efnb1 (ephrin B1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Efnb1 (ephrin B1)
Pan paniscus (bonobo/pygmy chimpanzee) : EFNB1 (ephrin B1)
Canis lupus familiaris (dog) : EFNB1 (ephrin B1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Efnb1 (ephrin B1)
Sus scrofa (pig) : EFNB1 (ephrin B1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X68,891,227 - 68,904,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X69,764,314 - 69,777,121 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X87,163,176 - 87,175,982 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X87,236,467 - 87,249,273 (+)NCBI
CeleraX64,624,957 - 64,637,749 (+)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Efnb1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 2540
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-09-17
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.