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Gene: Matr3 (matrin 3) Rattus norvegicus
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Symbol: Matr3
Name: matrin 3
Description: Predicted to have identical protein binding activity and miRNA binding activity. Predicted to be involved in several processes, including activation of innate immune response; blastocyst formation; and heart development. Localizes to the cytoplasm and nuclear matrix. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 21. Orthologous to human MATR3 (matrin 3); INTERACTS WITH 17alpha-ethynylestradiol; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: matrin-3; nuclear scaffold protein P130/MAT3; P130/MAT3; snhg4
Orthologs:
Homo sapiens (human) : MATR3 (matrin 3)  HGNC  Alliance
Mus musculus (house mouse) : Matr3 (matrin 3)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Matr3 (matrin 3)
Pan paniscus (bonobo/pygmy chimpanzee) : MATR3 (matrin 3)
Canis lupus familiaris (dog) : MATR3 (matrin 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Matr3 (matrin 3)
Sus scrofa (pig) : MATR3 (matrin 3)
more info ...
Related Pseudogenes: LOC100360347   Matr3-ps1  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01828,351,691 - 28,390,764 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01828,074,345 - 28,103,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41828,171,639 - 28,215,659 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11828,221,884 - 28,242,302 (+)NCBI
Celera1826,897,382 - 26,926,742 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Matr3
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3052
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.