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Gene: Nup50 (nucleoporin 50) Rattus norvegicus
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Symbol: Nup50
Name: nucleoporin 50
Description: Predicted to be involved in neural tube formation and protein import into nucleus. Localizes to the nuclear pore. Orthologous to human NUP50 (nucleoporin 50); PARTICIPATES IN RNA transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 50 kDa nucleoporin; Npap60; nuclear pore associated protein; nuclear pore complex protein Nup50; nuclear pore-associated protein 60 kDa-like; nucleoporin 50 kDa; nucleoporin Nup50; nucleoprotein 50; Nucleoprotein 50kD; Rtp60
Orthologs:
Homo sapiens (human) : NUP50 (nucleoporin 50)  HGNC  Alliance
Mus musculus (house mouse) : Nup50 (nucleoporin 50)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Nup50 (nucleoporin 50)
Pan paniscus (bonobo/pygmy chimpanzee) : NUP50 (nucleoporin 50)
Canis lupus familiaris (dog) : NUP50 (nucleoporin 50)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Nup50 (nucleoporin 50)
Sus scrofa (pig) : NUP50 (nucleoporin 50)
Chlorocebus sabaeus (green monkey) : NUP50 (nucleoporin 50)
Heterocephalus glaber (naked mole-rat) : Nup50 (nucleoporin 50)
more info ...
Related Pseudogenes: LOC500265  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07125,833,557 - 125,850,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7125,833,557 - 125,850,827 (+)Ensembl
Rnor_5.07125,547,680 - 125,566,758 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47122,945,879 - 122,963,152 (+)NCBIRGSC3.4rn4RGSC3.4
Celera7112,345,858 - 112,363,874 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Nup50
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3191
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.