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Gene: Vps52 (VPS52 subunit of GARP complex) Rattus norvegicus
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Symbol: Vps52
Name: VPS52 subunit of GARP complex
Description: Predicted to have Rab GTPase binding activity and syntaxin binding activity. Predicted to be involved in several processes, including Golgi to vacuole transport; embryonic ectodermal digestive tract development; and endosomal transport. Predicted to localize to the cytoplasm and membrane. Orthologous to human VPS52 (VPS52 subunit of GARP complex); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Are1; SAC2 (suppressor of actin mutations 2 homolog)-like (S. cerevisiae); SAC2 (supressor of actin mutations 2, homolog)-like (S. cerevisiae) ; SAC2 suppressor of actin mutation 2-like; SAC2 suppressor of actin mutations 2-like protein; Sacm2l; suppressor of actin mutation 2-like; vacuolar protein sorting 52 (yeast); vacuolar protein sorting 52 homolog; vacuolar protein sorting 52 homolog (S. cerevisiae); vacuolar protein sorting-associated protein 52 homolog; VPS52 GARP complex subunit
Orthologs:
Homo sapiens (human) : VPS52 (VPS52 subunit of GARP complex)  HGNC  Alliance
Mus musculus (house mouse) : Vps52 (VPS52 GARP complex subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps52 (VPS52 subunit of GARP complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS52 (VPS52 subunit of GARP complex)
Canis lupus familiaris (dog) : VPS52 (VPS52 subunit of GARP complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps52 (VPS52 subunit of GARP complex)
Sus scrofa (pig) : VPS52 (VPS52 subunit of GARP complex)
more info ...
Related Pseudogenes: Sacm2l-ps3  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0205,431,997 - 5,441,736 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0207,490,616 - 7,500,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,073,753 - 5,083,339 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1205,074,730 - 5,083,444 (-)NCBI
Celera206,506,237 - 6,515,816 (-)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Vps52
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3618
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.