Gene: Sdc1 (syndecan 1) Rattus norvegicus
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Symbol: Sdc1
Name: syndecan 1
Description: Predicted to have identical protein binding activity and protein C-terminus binding activity; involved in several processes, including animal organ development, inflammatory response, and response to cAMP; localizes to the protein-containing complex; used to study familial hyperlipidemia; biomarker of myocardial infarction, obesity, and proteinuria; orthologous to human SDC1 (syndecan 1); PARTICIPATES IN altered melanocortin system pathway; melanocortin system pathway; obesity pathway; INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: HSPG; Synd1; syndeca; syndecan; syndecan-1
Orthologs:
Homo sapiens (human) : SDC1 (syndecan 1)  HGNC  Alliance
Mus musculus (house mouse) : Sdc1 (syndecan 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sdc1 (syndecan 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SDC1 (syndecan 1)
Canis lupus familiaris (dog) : SDC1 (syndecan 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sdc1 (syndecan 1)
Sus scrofa (pig) : SDC1 (syndecan 1)
more info ...
Is Marker For: Strains:   SD  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0633,885,576 - 33,908,038 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0643,667,444 - 43,689,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4632,253,352 - 32,275,812 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1632,256,304 - 32,278,764 (+)NCBI
Celera631,009,934 - 31,032,396 (+)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sdc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3648
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.