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Gene: Sdc2 (syndecan 2) Rattus norvegicus
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Symbol: Sdc2
Name: syndecan 2
Description: Exhibits PDZ domain binding activity and identical protein binding activity. Involved in several processes, including dendrite morphogenesis; response to caffeine; and response to hypoxia. Localizes to the neuronal cell body. Colocalizes with the synapse. Human ortholog(s) of this gene implicated in cleft lip and cleft palate. Orthologous to human SDC2 (syndecan 2); PARTICIPATES IN fibroblast growth factor signaling pathway; syndecan signaling pathway; cell-extracellular matrix signaling pathway; INTERACTS WITH (+)-schisandrin B; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: fibroglycan; heparan sulfate proteoglycan core protein; HSPG; Ryudocan/syndecan 2; SYND2; syndecan-2
Orthologs:
Homo sapiens (human) : SDC2 (syndecan 2)  HGNC  Alliance
Mus musculus (house mouse) : Sdc2 (syndecan 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sdc2 (syndecan 2)
Pan paniscus (bonobo/pygmy chimpanzee) : SDC2 (syndecan 2)
Canis lupus familiaris (dog) : SDC2 (syndecan 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sdc2 (syndecan 2)
Sus scrofa (pig) : SDC2 (syndecan 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0771,572,731 - 71,686,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0771,743,895 - 71,857,365 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4768,290,558 - 68,405,183 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1768,311,497 - 68,426,917 (+)NCBI
Celera761,250,356 - 61,362,471 (+)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sdc2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3649
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.