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Gene: Sema6c (semaphorin 6C) Rattus norvegicus
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Symbol: Sema6c
Name: semaphorin 6C
Description: Predicted to have chemorepellent activity and semaphorin receptor binding activity. Involved in axon guidance. Predicted to localize to several cellular components, including cell surface; extracellular space; and integral component of plasma membrane. Orthologous to human SEMA6C (semaphorin 6C); INTERACTS WITH 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: sema domain transmembrane domain (TM) and cytoplasmic domain (semaphorin) 6C; sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C; Sema Y; semaphorin-6C; semaphorin-Y
Orthologs:
Homo sapiens (human) : SEMA6C (semaphorin 6C)  HGNC  Alliance
Mus musculus (house mouse) : Sema6c (sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sema6c (semaphorin 6C)
Pan paniscus (bonobo/pygmy chimpanzee) : SEMA6C (semaphorin 6C)
Canis lupus familiaris (dog) : SEMA6C (semaphorin 6C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sema6c (semaphorin 6C)
Sus scrofa (pig) : SEMA6C (semaphorin 6C)
Chlorocebus sabaeus (African green monkey) : SEMA6C (semaphorin 6C)
Heterocephalus glaber (naked mole-rat) : Sema6c (semaphorin 6C)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02196,330,777 - 196,347,218 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,334,626 - 196,344,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,827,260 - 215,843,686 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,069,489 - 190,078,845 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12190,032,242 - 190,041,599 (+)NCBI
Celera2175,271,228 - 175,280,584 (+)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sema6c
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3659
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.