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Gene: Tcf12 (transcription factor 12) Rattus norvegicus
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Symbol: Tcf12
Name: transcription factor 12
Description: Exhibits HMG box domain binding activity and cAMP response element binding activity. Predicted to contribute to transcription regulatory region DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Localizes to the nucleus. Human ortholog(s) of this gene implicated in craniosynostosis. Orthologous to human TCF12 (transcription factor 12); INTERACTS WITH 2,6-dinitrotoluene; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: DNA-binding protein HTF4; E-box-binding protein; salivary-specific cAMP response element-binding protein alpha; SCBP alpha; SCBP-alpha; SCBPA; TCF-12; transcription factor HTF-4
Orthologs:
Homo sapiens (human) : TCF12 (transcription factor 12)  HGNC  Alliance
Mus musculus (house mouse) : Tcf12 (transcription factor 12)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tcf12 (transcription factor 12)
Pan paniscus (bonobo/pygmy chimpanzee) : TCF12 (transcription factor 12)
Canis lupus familiaris (dog) : TCF12 (transcription factor 12)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tcf12 (transcription factor 12)
Sus scrofa (pig) : TCF12 (transcription factor 12)
Chlorocebus sabaeus (African green monkey) : TCF12 (transcription factor 12)
Heterocephalus glaber (naked mole-rat) : Tcf12 (transcription factor 12)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0878,343,634 - 78,657,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl878,345,754 - 78,655,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0874,423,476 - 74,735,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4876,311,327 - 76,498,091 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1876,330,380 - 76,517,143 (-)NCBI
Celera868,938,004 - 69,243,587 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Tcf12
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3829
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.