Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Tsc22d1 (TSC22 domain family, member 1) Rattus norvegicus
Analyze
Symbol: Tsc22d1
Name: TSC22 domain family, member 1
Description: Exhibits DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II proximal promoter sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to the cytoplasm and nucleus. Orthologous to human TSC22D1 (TSC22 domain family member 1); INTERACTS WITH (+)-schisandrin B; (RS)-amphetamine; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC100912462; LOC498545; MGC156831; regulatory protein TSC-22; similar to transforming growth factor beta 1 induced transcript 4 isoform 1; TGFB-stimulated clone 22 homolog; Tgfb1i4; transforming growth factor beta 1 induced transcript 4; Transforming growth factor beta stimulated clone 22; transforming growth factor beta-1-induced transcript 4 protein; TS22A; TSC-22; TSC22 domain family protein 1; uncharacterized LOC100912462
Orthologs:
Homo sapiens (human) : TSC22D1 (TSC22 domain family member 1)  HGNC  Alliance
Mus musculus (house mouse) : Tsc22d1 (TSC22 domain family, member 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tsc22d1 (TSC22 domain family member 1)
Pan paniscus (bonobo/pygmy chimpanzee) : TSC22D1 (TSC22 domain family member 1)
Canis lupus familiaris (dog) : TSC22D1 (TSC22 domain family member 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tsc22d1 (TSC22 domain family member 1)
Sus scrofa (pig) : TSC22D1 (TSC22 domain family member 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01558,554,358 - 58,658,156 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1558,554,374 - 58,658,153 (+)Ensembl
Rnor_5.01562,249,572 - 62,348,601 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41557,404,929 - 57,502,817 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11557,515,360 - 57,518,594 (+)NCBI
Celera1551,368,663 - 51,469,040 (+)NCBICelera
Cytogenetic Map15q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Tsc22d1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 3850
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.